Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H4O27_RS02380 Genome accession   NZ_CP062976
Coordinates   461119..463302 (-) Length   727 a.a.
NCBI ID   WP_165009814.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456119..468302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS02350 - 456541..457164 (+) 624 WP_165009823.1 LysE family translocator -
  H4O27_RS02355 - 457207..457452 (+) 246 WP_095501972.1 Fis family transcriptional regulator -
  H4O27_RS02360 - 457520..457954 (-) 435 Protein_451 IS3 family transposase -
  H4O27_RS02365 - 458111..458953 (-) 843 WP_165009820.1 class II glutamine amidotransferase -
  H4O27_RS02370 aroB 459306..460385 (-) 1080 WP_165009818.1 3-dehydroquinate synthase -
  H4O27_RS02375 - 460483..461007 (-) 525 WP_165009816.1 shikimate kinase -
  H4O27_RS02380 pilQ 461119..463302 (-) 2184 WP_165009814.1 type IV pilus secretin PilQ Machinery gene
  H4O27_RS02385 - 463321..463914 (-) 594 WP_165009812.1 pilus assembly protein PilP -
  H4O27_RS02390 - 463935..464609 (-) 675 WP_165009810.1 type 4a pilus biogenesis protein PilO -
  H4O27_RS02395 pilN 464610..465221 (-) 612 WP_165009808.1 PilN domain-containing protein Machinery gene
  H4O27_RS02400 pilM 465223..466329 (-) 1107 WP_165009806.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78768.29 Da        Isoelectric Point: 9.5396

>NTDB_id=492172 H4O27_RS02380 WP_165009814.1 461119..463302(-) (pilQ) [Neisseria yangbaofengii strain ZJ785]
MKINRMTKLFAALSMAMAVQAAFAGNITDINVSTLPDNQKIIKIRFDSDITSPTGFVTSTPSRIALDFANTNIQLSQPVL
EYSDPLLNQITAAQNNDRARILLGLNKTGQYNTEIRGNEVWVYVSEAADQNMAAPASTYSAPTSAPTPAVARATQTSQVA
TSANVDFRKGLRNSGVVELSAPTFSGSPDVKQERDRVVITLKNHPLPTQAQRNLDVGDFNTPVQNVTLKRIGNATQLIIR
TKGNWDIDTKSAAGRHTFEIVPKAATTESRGLPNNANKSFNGRKISLDFQDIEVRTILQILSKESGMNIVASDTVNGKMT
LSLKDVPWDQALDLVMQARNLGMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLLSQTFQLKYKNVEEFRKILRIE
ENGGSGNSNTRNTLLSNRGSALIDPATNTLIITDNHSVIEKFRKLINELDVPTRQVMVEARIVEADEGFSRDLGVKFGYT
GIKGRNTWGSSWSNAVKNTGTAYNNNIAAANAILSGSTTIPALAALEMSPNISLPTTNAATTSIALVRSLASGALGLELA
AAEGQNKSKTISNPRVLTQDRKEATIESGTEIPYQEATSSGATSVSFKKAVLGLTVTPNITPDGQIIMTVKINKDTPQNC
TVDSLSTMCISTKSLNTQAMVEDGGTLIVGGIYEEENSNTVNKVPLLGDIPVVGNLFKSRSRNEARRELLVFITPRIMDS
VGNNLRY

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=492172 H4O27_RS02380 WP_165009814.1 461119..463302(-) (pilQ) [Neisseria yangbaofengii strain ZJ785]
ATGAAAATCAACCGTATGACAAAACTCTTTGCTGCTCTGAGTATGGCAATGGCTGTTCAGGCGGCCTTCGCCGGCAATAT
CACCGATATCAACGTATCGACTTTGCCTGACAATCAAAAAATCATCAAAATCCGTTTTGATAGCGATATTACCAGCCCTA
CCGGTTTTGTAACGTCGACACCGTCACGCATTGCCTTGGACTTTGCCAACACCAATATTCAATTATCCCAACCGGTATTA
GAATATTCAGACCCTTTATTGAACCAAATTACCGCGGCTCAAAACAACGATCGCGCCCGCATTTTGTTGGGCTTGAACAA
AACAGGCCAATACAACACCGAAATCCGTGGTAACGAAGTATGGGTTTATGTCAGCGAAGCCGCTGATCAAAATATGGCTG
CGCCGGCAAGCACCTATTCCGCTCCGACATCTGCCCCTACTCCTGCCGTAGCCCGTGCTACTCAAACCAGCCAAGTAGCC
ACCAGTGCCAATGTTGATTTCCGCAAAGGTTTGCGTAATTCAGGTGTTGTAGAATTATCAGCCCCCACCTTCTCAGGCAG
CCCTGACGTGAAACAAGAGCGCGACCGTGTGGTGATTACCTTAAAAAATCACCCTCTACCAACCCAAGCACAACGTAATT
TAGATGTGGGAGACTTCAATACACCGGTGCAAAACGTGACTTTAAAACGTATTGGCAATGCAACACAATTGATTATCCGC
ACCAAAGGCAACTGGGACATTGACACCAAATCTGCTGCCGGTCGCCATACCTTTGAAATCGTACCCAAAGCTGCTACAAC
CGAAAGCCGCGGCTTGCCCAACAATGCCAACAAATCTTTCAACGGCCGCAAAATTTCTTTGGATTTCCAAGATATAGAAG
TCCGTACCATTTTGCAGATTTTGTCTAAAGAATCAGGCATGAATATCGTGGCCAGCGACACGGTTAACGGCAAAATGACT
TTATCTTTAAAAGACGTACCTTGGGATCAGGCGTTAGATTTGGTAATGCAGGCGCGTAACTTAGGCATGCGCCGCCAAGG
CAATATCATCAATATCGCTCCGCGCGATGAATTATTGGCTAAAGATAAAGCTTTCTTACAAGCAGAAAAAGAGATTGCCG
AATTAGGTCCATTATTGTCTCAAACCTTCCAACTGAAATACAAAAACGTTGAAGAATTCCGCAAAATCCTTCGTATTGAA
GAAAACGGCGGTAGCGGTAACAGCAATACCCGCAATACCTTGTTAAGCAACCGCGGCAGCGCCTTGATTGACCCTGCCAC
CAATACTTTGATTATTACCGATAATCACAGCGTGATTGAGAAATTCCGCAAGCTGATTAACGAGCTGGACGTTCCGACAC
GCCAAGTCATGGTTGAAGCACGAATCGTAGAAGCAGACGAAGGCTTCTCACGCGATTTGGGTGTAAAATTCGGCTATACA
GGCATTAAAGGCCGCAATACTTGGGGTTCAAGCTGGTCAAATGCTGTAAAGAATACCGGTACTGCTTACAATAACAATAT
AGCTGCAGCCAACGCTATTTTAAGCGGTTCTACCACCATCCCTGCTTTGGCCGCTTTGGAAATGAGCCCAAACATTAGCC
TGCCAACCACCAATGCAGCAACCACATCAATTGCCTTGGTCCGCTCGCTTGCCTCCGGCGCATTGGGCTTGGAATTAGCC
GCAGCCGAAGGCCAAAATAAGAGCAAAACTATTTCCAATCCGCGCGTGCTGACACAAGACCGCAAAGAAGCGACCATCGA
ATCGGGTACAGAAATTCCTTACCAAGAAGCGACTTCGAGCGGTGCTACCTCGGTATCGTTTAAAAAAGCGGTATTAGGCT
TGACGGTAACGCCGAATATCACGCCTGACGGCCAAATCATTATGACGGTGAAAATCAATAAAGATACACCGCAAAACTGT
ACCGTAGATTCATTGAGCACCATGTGTATCAGCACCAAGAGCCTGAACACGCAAGCCATGGTGGAAGATGGCGGCACCTT
GATTGTGGGCGGTATTTACGAGGAAGAAAATTCCAATACTGTCAACAAAGTACCTTTATTGGGCGATATTCCTGTAGTAG
GTAACTTGTTCAAATCACGCAGCCGCAATGAAGCGCGCCGTGAATTGCTGGTTTTCATCACGCCGCGCATTATGGATAGC
GTAGGCAACAACTTGCGCTACTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(308-354)

Bacterial type II and III secretion system protein (Secretin)

(562-719)

AMIN domain (AMIN)

(37-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis MC58

58.028

100

0.631
  pilQ Neisseria meningitidis M1080

58.493

100

0.63
  pilQ Neisseria gonorrhoeae strain FA1090

60.94

100

0.624