Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H4O27_RS02395 Genome accession   NZ_CP062976
Coordinates   464610..465221 (-) Length   203 a.a.
NCBI ID   WP_165009808.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459610..470221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS02375 - 460483..461007 (-) 525 WP_165009816.1 shikimate kinase -
  H4O27_RS02380 pilQ 461119..463302 (-) 2184 WP_165009814.1 type IV pilus secretin PilQ Machinery gene
  H4O27_RS02385 - 463321..463914 (-) 594 WP_165009812.1 pilus assembly protein PilP -
  H4O27_RS02390 - 463935..464609 (-) 675 WP_165009810.1 type 4a pilus biogenesis protein PilO -
  H4O27_RS02395 pilN 464610..465221 (-) 612 WP_165009808.1 PilN domain-containing protein Machinery gene
  H4O27_RS02400 pilM 465223..466329 (-) 1107 WP_165009806.1 type IV pilus assembly protein PilM -
  H4O27_RS02405 - 466480..468891 (+) 2412 WP_165009804.1 penicillin-binding protein 1A -
  H4O27_RS02410 yihA 468941..469633 (-) 693 WP_226883419.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22811.40 Da        Isoelectric Point: 6.5019

>NTDB_id=492173 H4O27_RS02395 WP_165009808.1 464610..465221(-) (pilN) [Neisseria yangbaofengii strain ZJ785]
MIELIKINLLPYREEIRQRKKQQFKILMLTALLIGLGLSALAYLSINGAIDSQQGRNAFLESEIKKLDDDLGEIKKLQAE
KENFLAKKIKVEELQEKRSQAAYIIDTLNVLTPDNTYLTALEAENPTTYKVTGRAISDNKIAVFMRALPSTGVFSQPELL
SIKKVENYQEFTLRVLLTQNTAPVANLTASEAALQTTPEQEVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=492173 H4O27_RS02395 WP_165009808.1 464610..465221(-) (pilN) [Neisseria yangbaofengii strain ZJ785]
ATGATTGAACTTATTAAAATCAACCTTCTTCCTTATCGGGAAGAGATTAGACAACGTAAAAAGCAACAGTTCAAAATATT
AATGCTGACTGCCTTGCTGATTGGCTTGGGCTTATCAGCATTGGCCTATCTGAGCATTAATGGCGCCATCGACAGCCAGC
AAGGCCGCAATGCATTCCTTGAGTCGGAAATCAAAAAACTGGATGACGATTTGGGTGAAATCAAAAAGCTGCAAGCAGAA
AAAGAAAATTTCTTAGCCAAGAAAATCAAAGTTGAGGAATTACAGGAAAAACGTTCTCAAGCGGCATACATTATTGATAC
GCTGAATGTTTTGACACCTGACAATACCTATCTGACTGCTTTGGAAGCTGAGAATCCGACCACCTACAAAGTGACCGGAC
GTGCTATCAGCGACAACAAAATCGCCGTATTTATGCGCGCATTGCCAAGCACAGGCGTATTCTCTCAACCAGAATTGTTG
AGCATCAAAAAAGTAGAAAACTATCAAGAATTTACTCTGCGTGTCTTACTGACTCAAAACACCGCTCCTGTGGCTAACCT
TACCGCTTCAGAAGCTGCGCTTCAGACGACACCTGAACAGGAGGTAAAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(105-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

55.367

87.192

0.483