Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H4O27_RS00470 Genome accession   NZ_CP062976
Coordinates   92851..94065 (+) Length   404 a.a.
NCBI ID   WP_165010534.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 87851..99065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS00455 - 88689..89282 (+) 594 WP_165010528.1 DUF4390 domain-containing protein -
  H4O27_RS00460 - 89286..91415 (+) 2130 WP_165010530.1 PAS domain-containing sensor histidine kinase -
  H4O27_RS00465 - 91402..92682 (+) 1281 WP_165010532.1 sigma-54 dependent transcriptional regulator -
  H4O27_RS00470 dprA 92851..94065 (+) 1215 WP_165010534.1 DNA-processing protein DprA Machinery gene
  H4O27_RS00475 - 94082..94537 (+) 456 WP_165010536.1 DUF494 family protein -
  H4O27_RS00480 topA 94603..96918 (+) 2316 WP_165010538.1 type I DNA topoisomerase -
  H4O27_RS00485 - 97694..98086 (+) 393 WP_165010542.1 helix-turn-helix domain-containing protein -
  H4O27_RS00490 rsmD 98220..98795 (+) 576 WP_165010544.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence


Protein


Download         Length: 404 a.a.        Molecular weight: 43836.98 Da        Isoelectric Point: 5.4472

>NTDB_id=492164 H4O27_RS00470 WP_165010534.1 92851..94065(+) (dprA) [Neisseria yangbaofengii strain ZJ785]
MNDNERFAWVQLALTPYVGAESFLILLQHFGSAEAALAAPSEIIAKLVRHKQAVAAWQHADKRDAAKVAAEAALNWAHQD
DCRLLLLQDDDFPDMLTEGITPPPLLFLRGNSDLLHKASAAVVGSRHATPQAMRIARDFGMALSEKGIPVVSGMAAGIDT
AAHQGALLSDGGTIAVWGTGIDRIYPPSNKQLAYKIAERGLIISEFPLDTRPYAGNFPRRNRLIAALSRLTLVVEAAVES
GSLITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVESLEDILQECPQLLQNTPLPSYSIYKRPQNEFTTESEA
KPETGAKPLAETNIRPSEKERPSENQNTADGTLLNAMGYDAVHPDTLAELLNWPAVDVYAQLLEYELEGMIAPLAGGRYQ
RIKT

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=492164 H4O27_RS00470 WP_165010534.1 92851..94065(+) (dprA) [Neisseria yangbaofengii strain ZJ785]
ATGAACGACAACGAACGCTTTGCATGGGTACAGCTCGCGCTGACGCCTTATGTCGGCGCGGAAAGTTTTTTGATTTTGCT
GCAACATTTCGGCAGTGCAGAAGCGGCATTGGCTGCGCCGTCTGAAATCATCGCTAAATTGGTGAGGCACAAACAAGCCG
TGGCTGCGTGGCAACATGCGGATAAACGCGATGCCGCCAAGGTTGCCGCCGAAGCTGCGTTAAACTGGGCGCATCAGGAT
GATTGCCGTTTGCTGCTGTTGCAGGACGATGATTTTCCCGATATGCTGACCGAAGGCATCACGCCGCCGCCGCTGTTATT
TTTGCGCGGCAATAGCGATTTACTACACAAAGCTTCCGCCGCGGTTGTCGGCAGCCGTCATGCCACCCCGCAGGCGATGC
GCATTGCCCGCGATTTCGGCATGGCGTTGAGTGAAAAAGGCATTCCGGTGGTTTCCGGTATGGCGGCCGGTATTGATACC
GCTGCCCATCAAGGGGCACTGCTTTCAGACGGCGGTACCATCGCCGTGTGGGGCACGGGCATAGACCGCATTTATCCGCC
GTCGAATAAACAGCTTGCCTACAAAATCGCCGAGCGCGGTCTGATTATCAGCGAGTTTCCATTGGACACGCGCCCGTATG
CCGGTAATTTTCCGCGCCGCAACCGTCTGATTGCCGCTTTATCGCGTTTGACCTTGGTGGTGGAAGCGGCGGTTGAATCC
GGTTCGCTGATTACCGCCAAGCTCGCCGCCGAGATGGGGCGCGAAGTGATGGCGGTGCCCGGTTCGATTGACAATCCGCA
CAGCAAAGGTTGCCACAAGCTGATTAAAGATGGTGCCAAACTGGTGGAAAGTTTGGAAGATATCTTACAAGAATGTCCGC
AGCTATTGCAAAACACCCCATTACCATCATATTCTATATATAAGCGTCCGCAAAACGAATTCACCACTGAGTCGGAAGCC
AAGCCCGAAACCGGCGCCAAACCACTTGCTGAAACCAATATCAGGCCGTCTGAAAAGGAGAGGCCGTCTGAAAACCAAAA
CACGGCAGACGGCACTTTATTAAACGCCATGGGTTACGATGCCGTTCATCCCGATACCTTGGCCGAGTTGCTGAATTGGC
CGGCGGTCGATGTTTACGCCCAATTGCTGGAATACGAGCTGGAAGGCATGATTGCCCCGCTGGCCGGCGGACGCTACCAA
CGGATTAAAACATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

69.136

100

0.693

  dprA Neisseria meningitidis MC58

69.136

100

0.693

  dprA Neisseria gonorrhoeae MS11

67.734

100

0.681

  dprA Neisseria gonorrhoeae strain FA1090

67.734

100

0.681