Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SPNOXC_RS00125 Genome accession   NC_017592
Coordinates   21775..22011 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae OXC141     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16775..27011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNOXC_RS00105 - 20468..20677 (+) 210 Protein_14 transposase -
  SPNOXC_RS11035 (SPNOXC00150) - 20712..21509 (-) 798 Protein_15 transposase -
  SPNOXC_RS00125 (SPNOXC00160) comW 21775..22011 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  SPNOXC_RS00130 (SPNOXC00170) - 22242..23528 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  SPNOXC_RS00135 (SPNOXC00180) - 23770..24918 (-) 1149 WP_000876732.1 site-specific integrase -
  SPNOXC_RS00140 (SPNOXC00190) - 25104..26027 (-) 924 WP_000122591.1 exonuclease domain-containing protein -
  SPNOXC_RS00145 (SPNOXC00200) - 26040..26423 (-) 384 WP_000136459.1 ImmA/IrrE family metallo-endopeptidase -
  SPNOXC_RS00150 (SPNOXC00210) - 26436..26801 (-) 366 WP_000492031.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=49215 SPNOXC_RS00125 WP_000939546.1 21775..22011(+) (comW) [Streptococcus pneumoniae OXC141]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=49215 SPNOXC_RS00125 WP_000939546.1 21775..22011(+) (comW) [Streptococcus pneumoniae OXC141]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment