Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BL8807_RS04760 Genome accession   NZ_CP062948
Coordinates   1293409..1295265 (+) Length   618 a.a.
NCBI ID   WP_072726903.1    Uniprot ID   A0A261FUH6
Organism   Bifidobacterium lemurum strain DSM 28807     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288409..1300265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL8807_RS04745 (BL8807_04745) - 1289508..1290731 (-) 1224 WP_083570320.1 cation:proton antiporter -
  BL8807_RS04750 (BL8807_04750) - 1290968..1292473 (+) 1506 WP_083570322.1 amino acid permease -
  BL8807_RS04755 (BL8807_04755) - 1292801..1293292 (+) 492 WP_072726902.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL8807_RS04760 (BL8807_04760) rcrP 1293409..1295265 (+) 1857 WP_072726903.1 ABC transporter ATP-binding protein Regulator
  BL8807_RS04765 (BL8807_04765) rcrQ 1295337..1297163 (+) 1827 WP_072726932.1 ABC transporter ATP-binding protein Regulator
  BL8807_RS04770 (BL8807_04770) - 1297669..1298838 (-) 1170 WP_072726904.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 67052.31 Da        Isoelectric Point: 4.8348

>NTDB_id=492086 BL8807_RS04760 WP_072726903.1 1293409..1295265(+) (rcrP) [Bifidobacterium lemurum strain DSM 28807]
MLRICKYLSKTEIGEMLVALVFIVAQIWLDLELPDYMSEITTLVETQGSEMSDIWIAGGKMLAISLGSVACAIITGFFAA
RVSASFSQRLRSLEFAKVESFSTAELNRFSTASLITRSTNDVTQIQMFITMGLTMIVKAPIMAVWAVCKIAGKGFEWTLA
TGIAVGVLLVGVAALMALVMPKFRAMQELTDNINLVARENLTGLRVVRAYNAEDYQETKFAKANKDLTDTQLFTNRAMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAEATDKLTLFSNMVVFSSYSVQVIMSFLMLSMVFVLWPRADVSARRVLEVLDTQ
PSIADGPRTAGEPGVAGEIEFRDVTFAYPDSQSPMLEHVSFTVKPGQTIAFIGSTGSGKSTLINLVPRFYDATEGEVLVD
GVNVRDYELKALRDKIGYVPQTSVLFKGTVESNVSYGDGRRGDASTALGMTKEGAPGLAKEGAAGAAAEGAPTGEALTAS
VREACGVAQATEFVEKMDGTYQAPIAQSGSNVSGGQKQRLSIARAVWRNPEILIFDDSFSALDFRTDRAVRDALKTHAQG
STKMIVAQRIGTIMDADQIVVLEQGRMVGHGTHKQLLDECDVYRQIAESQLTPEELAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=492086 BL8807_RS04760 WP_072726903.1 1293409..1295265(+) (rcrP) [Bifidobacterium lemurum strain DSM 28807]
ATGCTTCGTATCTGCAAATATCTGTCGAAGACGGAGATCGGCGAGATGCTCGTCGCCCTCGTCTTCATCGTCGCGCAGAT
CTGGCTTGACCTGGAACTGCCCGACTATATGTCGGAAATCACCACGCTGGTCGAAACCCAGGGCAGTGAGATGAGCGACA
TCTGGATCGCAGGCGGCAAGATGCTTGCGATCTCCCTCGGTTCCGTGGCCTGCGCGATCATCACCGGATTCTTCGCCGCG
CGTGTGTCGGCCTCCTTCAGCCAGCGGCTGCGCAGCCTGGAGTTCGCCAAGGTCGAATCGTTCTCGACTGCCGAGCTCAA
CCGTTTCTCCACCGCCAGTCTGATCACGCGATCCACCAACGACGTCACGCAGATCCAGATGTTCATCACCATGGGCCTGA
CCATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAAATCGCCGGCAAAGGCTTCGAATGGACGCTGGCG
ACGGGCATCGCCGTGGGCGTCCTGCTGGTGGGCGTCGCCGCGCTGATGGCGCTGGTCATGCCGAAGTTCCGCGCCATGCA
GGAGCTTACCGACAACATCAACCTCGTGGCTCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAGG
ACTATCAGGAGACGAAGTTCGCCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGCGATGGCCATC
ATGATGCCGCTGATGAACACCGTGATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTGATCGAGGCGGC
CGAAGCCACCGACAAACTCACCCTGTTCTCTAATATGGTGGTGTTCTCCAGCTATTCCGTGCAGGTCATCATGAGCTTCC
TGATGCTGAGCATGGTGTTCGTGCTGTGGCCCCGCGCCGACGTGTCCGCCAGGCGTGTGCTCGAAGTGCTCGACACCCAG
CCCTCCATCGCCGATGGCCCCCGCACGGCGGGCGAGCCGGGCGTGGCCGGTGAGATCGAATTCCGCGACGTGACTTTCGC
CTACCCCGACTCCCAGTCGCCGATGCTCGAACATGTGAGCTTCACCGTCAAGCCCGGGCAGACCATCGCCTTCATCGGCT
CCACCGGCTCCGGTAAATCCACGCTGATCAACCTCGTGCCGCGCTTCTACGATGCCACGGAGGGTGAGGTGCTTGTCGAC
GGCGTGAACGTGCGCGACTACGAACTCAAGGCCCTCCGCGACAAAATCGGCTACGTGCCGCAGACCTCCGTTCTGTTCAA
AGGCACGGTCGAATCCAATGTGAGCTACGGCGACGGACGGAGGGGAGATGCCTCGACTGCGCTCGGCATGACGAAGGAAG
GGGCGCCCGGCCTGGCGAAAGAGGGGGCAGCCGGTGCGGCGGCGGAAGGCGCGCCGACGGGCGAGGCCCTCACCGCCTCC
GTACGCGAGGCGTGCGGCGTGGCCCAGGCCACGGAATTCGTCGAGAAGATGGACGGCACCTACCAGGCCCCCATCGCCCA
AAGCGGATCCAATGTGTCCGGCGGGCAGAAACAGCGCCTATCCATCGCCCGCGCGGTATGGCGCAACCCGGAGATCCTCA
TCTTCGACGATTCCTTCTCCGCGCTGGACTTCCGCACCGACCGCGCCGTACGCGACGCGCTCAAAACCCACGCGCAGGGC
TCGACCAAGATGATCGTCGCCCAACGCATCGGCACCATCATGGACGCCGACCAGATCGTCGTGCTCGAACAGGGGCGCAT
GGTCGGCCACGGCACCCACAAGCAGCTGCTCGACGAATGCGACGTGTACCGGCAGATCGCCGAATCCCAGCTCACCCCGG
AAGAACTCGCCTCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-538)

ABC transporter transmembrane region (ABC_membrane)

(16-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A261FUH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.408

100

0.492