Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BL8807_RS04765 Genome accession   NZ_CP062948
Coordinates   1295337..1297163 (+) Length   608 a.a.
NCBI ID   WP_072726932.1    Uniprot ID   -
Organism   Bifidobacterium lemurum strain DSM 28807     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290337..1302163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL8807_RS04750 (BL8807_04750) - 1290968..1292473 (+) 1506 WP_083570322.1 amino acid permease -
  BL8807_RS04755 (BL8807_04755) - 1292801..1293292 (+) 492 WP_072726902.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL8807_RS04760 (BL8807_04760) rcrP 1293409..1295265 (+) 1857 WP_072726903.1 ABC transporter ATP-binding protein Regulator
  BL8807_RS04765 (BL8807_04765) rcrQ 1295337..1297163 (+) 1827 WP_072726932.1 ABC transporter ATP-binding protein Regulator
  BL8807_RS04770 (BL8807_04770) - 1297669..1298838 (-) 1170 WP_072726904.1 FAD:protein FMN transferase -
  BL8807_RS04775 (BL8807_04775) - 1298919..1300304 (+) 1386 WP_072726933.1 MFS transporter -
  BL8807_RS04780 (BL8807_04780) trhA 1300301..1301125 (-) 825 WP_370737563.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 66360.61 Da        Isoelectric Point: 5.1204

>NTDB_id=492087 BL8807_RS04765 WP_072726932.1 1295337..1297163(+) (rcrQ) [Bifidobacterium lemurum strain DSM 28807]
MGGVVEKPADFGGSMSKLIDFARKYIPAVIVALVLGMAGTICQIIGPDKLKDVTNEIAKGLPAMVDGKPVLGAIDLDAVT
HIALILVALYVGYALLGYLQSLLMATVTQRVAQNLRTAISAKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSLGS
LITSVTLFVGSLVMMFYNSWQLTLCAIGAALAGVIIMMVIMKASQKYFTRQQIALGDVNGHVEEMYAGHVVVKAYSGEAK
SIEQFEKYNADLYDSGWKSQFLSGLMMPLMNFVSNFGYVVVCVVGAALAMNGTISFGVIVAFMMYIRLFTQPLSQFAQAF
QNLQRTAAASERVFGFLDEPEMADESDLKPLLGYGRDENGKPTRVRGDVEFSHVSFGYSPDHTIIHDFSAEVKAGQKVAI
VGPTGAGKTTMVNLLMRFYEINGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIVYAKPDVTDQQVEDACR
AVGLHRFICSLPQGYDTVLDDKTALSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDQLTVGRTSFVIA
HRLSTIRDADMILVMRDGDIVERGTHEELLEADGFYAGLYNSQFALTD

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=492087 BL8807_RS04765 WP_072726932.1 1295337..1297163(+) (rcrQ) [Bifidobacterium lemurum strain DSM 28807]
ATGGGCGGCGTCGTTGAGAAGCCGGCCGACTTCGGCGGATCGATGAGCAAGCTCATCGATTTCGCGCGCAAATACATTCC
GGCCGTCATCGTCGCGCTGGTCCTCGGCATGGCCGGCACCATCTGCCAGATCATCGGGCCGGACAAACTCAAGGACGTCA
CCAACGAAATCGCCAAAGGCCTGCCCGCCATGGTCGACGGCAAGCCCGTGCTCGGCGCGATCGACCTCGACGCGGTCACG
CATATCGCGCTGATCCTCGTGGCGCTGTACGTCGGCTACGCGCTGCTGGGCTACCTGCAGAGCCTGCTCATGGCCACCGT
CACCCAACGGGTGGCGCAGAACCTGCGCACGGCCATCAGCGCGAAGATCAACAAACTGCCGCTCAAATACTTCGACAAGG
TCAGCTACGGCGACGTGCTCTCCCGCATCACCAACGACGTGGACGCCATCGGCCAGACCCTCGGCCAAAGCCTGGGCAGC
CTGATCACCTCGGTCACGCTGTTCGTCGGATCGCTCGTCATGATGTTCTACAACAGCTGGCAGCTCACCCTGTGCGCGAT
CGGCGCCGCCCTGGCCGGCGTCATCATCATGATGGTGATCATGAAGGCCTCGCAGAAGTACTTCACCCGCCAGCAGATCG
CGTTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGCCATGTGGTCGTCAAGGCCTATTCCGGCGAGGCAAAG
TCGATCGAGCAGTTCGAAAAGTACAACGCCGACCTGTACGACTCCGGCTGGAAGTCGCAGTTCCTTTCCGGCCTGATGAT
GCCGCTGATGAACTTCGTCTCCAACTTCGGCTATGTGGTGGTGTGCGTGGTGGGCGCGGCGCTCGCCATGAACGGCACCA
TCAGCTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGTCTGTTCACCCAGCCGCTCAGCCAGTTCGCGCAGGCCTTC
CAGAACCTGCAGCGCACGGCCGCCGCCTCCGAGCGCGTGTTCGGATTCCTCGACGAGCCCGAGATGGCCGACGAGTCCGA
CCTCAAGCCGCTGCTCGGCTACGGCCGCGACGAAAACGGCAAGCCGACGCGTGTGCGCGGCGACGTGGAGTTCAGTCACG
TGAGCTTCGGCTACTCGCCTGATCACACCATCATCCACGATTTCTCCGCCGAGGTGAAGGCCGGGCAGAAGGTCGCCATC
GTCGGACCCACCGGCGCGGGCAAAACCACCATGGTGAACCTGCTGATGCGCTTCTACGAGATCAACGGCGGTACCATCTC
CATCGACGGTGTGGATACCAAATCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCGATGGTGCTTCAGGACACATGGG
TGTTCCATGGAACCGTGCGCGAGAACATCGTCTACGCCAAGCCGGACGTCACCGACCAGCAAGTCGAGGACGCCTGCCGC
GCCGTGGGCCTGCACCGCTTCATCTGCTCGCTGCCGCAGGGCTATGACACCGTGCTCGATGACAAAACCGCGCTTTCCGC
GGGTCAGAAGCAGCTGCTCACCATCGCCCGGGCCATGGTGCAGGACGCGCCGATCCTCATCCTCGACGAGGCGACCAGCT
CGGTCGATACGCGCACCGAGGAGCTGATCCAAAAGGCGATGGACCAGCTGACGGTGGGCCGCACGAGCTTCGTGATCGCG
CACCGCCTGTCCACCATCCGCGACGCCGACATGATTCTTGTGATGCGCGACGGCGACATCGTCGAGCGCGGCACGCACGA
GGAACTGCTTGAGGCGGACGGCTTCTACGCGGGGCTGTACAACTCGCAGTTCGCGCTGACGGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(36-313)

ABC transporter (ABC_tran)

(386-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.33

97.204

0.538