Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BE0216_RS06765 Genome accession   NZ_CP062938
Coordinates   1546093..1547925 (-) Length   610 a.a.
NCBI ID   WP_094635906.1    Uniprot ID   -
Organism   Bifidobacterium eulemuris strain DSM 100216     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541093..1552925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE0216_RS06750 (BE0216_06750) - 1541206..1542594 (-) 1389 WP_226805819.1 MFS transporter -
  BE0216_RS06755 (BE0216_06755) - 1542672..1543697 (+) 1026 WP_094635969.1 FAD:protein FMN transferase -
  BE0216_RS06760 (BE0216_06760) rcrQ 1544195..1546021 (-) 1827 WP_094635968.1 ABC transporter ATP-binding protein Regulator
  BE0216_RS06765 (BE0216_06765) rcrP 1546093..1547925 (-) 1833 WP_094635906.1 ABC transporter ATP-binding protein Regulator
  BE0216_RS06770 (BE0216_06770) - 1548042..1548533 (-) 492 WP_094635905.1 MarR family winged helix-turn-helix transcriptional regulator -
  BE0216_RS06775 (BE0216_06775) - 1548689..1550206 (-) 1518 WP_094635904.1 amino acid permease -
  BE0216_RS06780 (BE0216_06780) - 1550438..1551661 (+) 1224 WP_094635903.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66531.87 Da        Isoelectric Point: 4.7853

>NTDB_id=492011 BE0216_RS06765 WP_094635906.1 1546093..1547925(-) (rcrP) [Bifidobacterium eulemuris strain DSM 100216]
MLRICKYLSKTEIGEMLVALVFIVAQIWLDLELPDYMSEITTLVETQGSEMSDIWIAGGKMLAISLGSVACAIITGFFAA
RVAASFSQRLRSLEFAKVESFSTAELNRFSTASLITRSTNDITQIQMFITMGLTMIVKAPIMAVWAVCKIAGKGFEWTLA
TGIAVAILLVGIAALMALVMPKFRAMQELTDNINLVARENLTGLRVVRAYNAEDYQETKFAKANKDLTDTQLFTNRAMAV
MMPLMNTIMNGLMLAVYWIGAYLIEAAEATDKLTLFSNMVVFSSYSVQVIMSFLMLSMVFVLWPRADVSARRVLEVLDTK
PTIADGPRTEGEPGVAGEVEFRDVTFTYPDSQSPMLEHVSFTVKPGQTIAFIGSTGSGKSTLINLVPRFYDATEGQVLVD
GMDVRDYEVKALRDKIGYVPQTSVLFKGTVESNVSYGDGRRGDASTALGMTKEGAVGAATEGVLTGEALTASVREACGVA
QATEFVEKMDGAYQAPIAQSGSNVSGGQKQRLSIARAVWRDPEILIFDDSFSALDFRTDRAVRDALKTHAQGATKMIVAQ
RIGTIMDADQIVVLEQGRMVGHGTHKQLLDECDVYRQIAESQLTPEELAS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=492011 BE0216_RS06765 WP_094635906.1 1546093..1547925(-) (rcrP) [Bifidobacterium eulemuris strain DSM 100216]
ATGCTTCGTATCTGCAAATATCTGTCGAAGACGGAGATCGGCGAAATGCTCGTCGCCCTCGTCTTCATCGTCGCGCAGAT
CTGGCTTGACCTGGAGCTGCCCGACTACATGTCGGAAATCACCACATTGGTCGAAACCCAAGGCAGCGAGATGAGCGACA
TCTGGATCGCGGGCGGCAAGATGCTCGCGATCTCCCTCGGTTCCGTGGCCTGCGCGATCATCACCGGATTCTTCGCCGCG
CGGGTGGCGGCCTCCTTCAGCCAGCGTCTGCGCAGCCTGGAGTTCGCCAAGGTCGAATCGTTCTCGACGGCCGAACTCAA
CCGCTTCTCCACCGCCAGTCTGATCACGCGTTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTGA
CCATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAAATCGCCGGCAAAGGCTTCGAATGGACGCTGGCG
ACGGGCATCGCCGTGGCTATTCTGCTGGTGGGCATCGCCGCGCTGATGGCGCTGGTCATGCCGAAGTTCCGCGCCATGCA
GGAGCTCACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGACGAAGTTCGCCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGCGATGGCCGTC
ATGATGCCGCTGATGAACACCATCATGAATGGTCTGATGCTGGCCGTGTATTGGATCGGCGCCTACCTGATCGAGGCGGC
CGAGGCCACTGACAAACTCACCCTCTTCTCCAATATGGTGGTGTTCTCCAGCTATTCCGTGCAGGTCATCATGAGCTTCC
TGATGCTGAGCATGGTGTTCGTGCTGTGGCCCCGCGCCGACGTGTCCGCCAGGCGCGTGCTCGAAGTGCTCGACACCAAG
CCCACCATCGCCGATGGGCCCCGCACGGAAGGTGAACCCGGGGTCGCCGGCGAGGTCGAATTCCGCGACGTGACCTTCAC
CTATCCCGACTCCCAGTCGCCGATGCTCGAACATGTGAGCTTCACCGTCAAGCCCGGCCAGACCATCGCCTTCATCGGCT
CCACAGGCTCCGGCAAATCCACGCTGATCAACCTCGTGCCGCGCTTCTACGACGCCACGGAGGGGCAGGTGCTCGTCGAC
GGTATGGACGTGCGTGATTACGAGGTCAAGGCCCTGCGCGACAAGATCGGCTATGTGCCGCAGACCTCCGTGCTGTTCAA
GGGTACGGTCGAATCCAATGTGAGCTACGGCGACGGGCGGAGGGGAGATGCCTCGACTGCGCTCGGCATGACGAAAGAGG
GGGCAGTCGGTGCGGCGACAGAAGGCGTGCTGACGGGCGAGGCGCTTACCGCCTCCGTACGCGAGGCGTGCGGCGTGGCC
CAGGCCACGGAATTCGTCGAGAAGATGGACGGCGCCTACCAGGCCCCCATCGCCCAAAGCGGCTCCAACGTGTCCGGCGG
GCAGAAGCAGCGCCTGTCCATCGCCCGCGCGGTATGGCGCGACCCGGAGATCCTCATCTTCGACGATTCCTTCTCCGCGC
TGGACTTCCGCACCGACCGCGCCGTGCGCGACGCGCTTAAAACCCACGCGCAGGGCGCGACCAAGATGATCGTCGCCCAA
CGCATCGGCACCATCATGGATGCCGACCAGATCGTCGTGCTCGAACAGGGGCGCATGGTCGGCCACGGCACCCACAAGCA
GCTGCTCGACGAATGCGACGTGTACCGGCAGATCGCCGAATCCCAGCTCACCCCGGAAGAACTCGCTTCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-530)

ABC transporter transmembrane region (ABC_membrane)

(16-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.871

100

0.497