Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IMO23_RS16455 Genome accession   NZ_CP062919
Coordinates   3393323..3394141 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3388323..3399141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS16440 (IMO23_16440) pilE 3388588..3389013 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  IMO23_RS16445 (IMO23_16445) pilY2 3389010..3389492 (-) 483 WP_109291820.1 type IV pilin protein Machinery gene
  IMO23_RS16450 (IMO23_16450) pilY1 3389505..3393248 (-) 3744 WP_407070926.1 PilC/PilY family type IV pilus protein Machinery gene
  IMO23_RS16455 (IMO23_16455) pilX 3393323..3394141 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IMO23_RS16460 (IMO23_16460) pilW 3394138..3395139 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IMO23_RS16465 (IMO23_16465) pilV 3395140..3395700 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IMO23_RS16470 (IMO23_16470) fimU 3395694..3396167 (-) 474 WP_109291824.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IMO23_RS16475 (IMO23_16475) ispH 3396337..3397287 (-) 951 WP_195707635.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IMO23_RS16480 (IMO23_16480) gmk 3397410..3398039 (+) 630 WP_000015937.1 guanylate kinase -
  IMO23_RS16485 (IMO23_16485) rpoZ 3398112..3398390 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IMO23_RS16490 (IMO23_16490) - 3398429..3398559 (+) 131 Protein_3226 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=491983 IMO23_RS16455 WP_000149374.1 3393323..3394141(-) (pilX) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=491983 IMO23_RS16455 WP_000149374.1 3393323..3394141(-) (pilX) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGCGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993