Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IMO23_RS16470 Genome accession   NZ_CP062919
Coordinates   3395694..3396167 (-) Length   157 a.a.
NCBI ID   WP_109291824.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3390694..3401167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS16455 (IMO23_16455) pilX 3393323..3394141 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IMO23_RS16460 (IMO23_16460) pilW 3394138..3395139 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IMO23_RS16465 (IMO23_16465) pilV 3395140..3395700 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IMO23_RS16470 (IMO23_16470) fimU 3395694..3396167 (-) 474 WP_109291824.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IMO23_RS16475 (IMO23_16475) ispH 3396337..3397287 (-) 951 WP_195707635.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IMO23_RS16480 (IMO23_16480) gmk 3397410..3398039 (+) 630 WP_000015937.1 guanylate kinase -
  IMO23_RS16485 (IMO23_16485) rpoZ 3398112..3398390 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IMO23_RS16490 (IMO23_16490) - 3398429..3398559 (+) 131 Protein_3226 hypothetical protein -
  IMO23_RS16495 (IMO23_16495) - 3398599..3400704 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16838.37 Da        Isoelectric Point: 6.2869

>NTDB_id=491986 IMO23_RS16470 WP_109291824.1 3395694..3396167(-) (fimU) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESERLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=491986 IMO23_RS16470 WP_109291824.1 3395694..3396167(-) (fimU) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTGAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994