Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IMO23_RS16445 Genome accession   NZ_CP062919
Coordinates   3389010..3389492 (-) Length   160 a.a.
NCBI ID   WP_109291820.1    Uniprot ID   A0A7S8ZTV1
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3384010..3394492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS16410 (IMO23_16410) - 3384117..3385151 (+) 1035 WP_001189448.1 lipase secretion chaperone -
  IMO23_RS16415 (IMO23_16415) - 3385266..3386207 (+) 942 WP_085941363.1 triacylglycerol lipase -
  IMO23_RS16420 (IMO23_16420) rplS 3386260..3386628 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  IMO23_RS16425 (IMO23_16425) trmD 3386836..3387576 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IMO23_RS16430 (IMO23_16430) rimM 3387622..3388170 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  IMO23_RS16435 (IMO23_16435) rpsP 3388190..3388441 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  IMO23_RS16440 (IMO23_16440) pilE 3388588..3389013 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  IMO23_RS16445 (IMO23_16445) pilY2 3389010..3389492 (-) 483 WP_109291820.1 type IV pilin protein Machinery gene
  IMO23_RS16450 (IMO23_16450) pilY1 3389505..3393248 (-) 3744 WP_407070926.1 PilC/PilY family type IV pilus protein Machinery gene
  IMO23_RS16455 (IMO23_16455) pilX 3393323..3394141 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17577.81 Da        Isoelectric Point: 8.4834

>NTDB_id=491981 IMO23_RS16445 WP_109291820.1 3389010..3389492(-) (pilY2) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAIDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=491981 IMO23_RS16445 WP_109291820.1 3389010..3389492(-) (pilY2) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACAACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCATTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S8ZTV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

39.535

100

0.425