Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F7R26_RS02380 Genome accession   NZ_CP062803
Coordinates   529429..529986 (+) Length   185 a.a.
NCBI ID   WP_150991789.1    Uniprot ID   A0A643FKQ5
Organism   Cupriavidus basilensis strain DSM 11853     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 524429..534986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R26_RS02370 (F7R26_002365) uvrA 524759..527623 (-) 2865 WP_150991795.1 excinuclease ABC subunit UvrA -
  F7R26_RS02375 (F7R26_002370) - 527975..529231 (+) 1257 WP_150991792.1 MFS transporter -
  F7R26_RS02380 (F7R26_002375) ssb 529429..529986 (+) 558 WP_150991789.1 single-stranded DNA-binding protein Machinery gene
  F7R26_RS02385 (F7R26_002380) acpA 530118..532256 (-) 2139 WP_150991786.1 acid phosphatase -
  F7R26_RS02390 (F7R26_002385) - 532486..533832 (+) 1347 WP_170301993.1 cytochrome-c peroxidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19122.96 Da        Isoelectric Point: 5.9566

>NTDB_id=491472 F7R26_RS02380 WP_150991789.1 529429..529986(+) (ssb) [Cupriavidus basilensis strain DSM 11853]
MASINKVILVGNLGADPETRYLPSGDAVSNIRLATTDRYKDKTSGEMKEATEWHRIAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWTDQSGVEKYSTEIVAEQMQMLGSRQGMGGGGGGGGDDMGGGGGGYGGGRESSGGGGGYGGGARSGGGQAAGGQ
QGGGARRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=491472 F7R26_RS02380 WP_150991789.1 529429..529986(+) (ssb) [Cupriavidus basilensis strain DSM 11853]
ATGGCATCGATCAACAAAGTCATCCTCGTCGGCAACCTGGGCGCGGATCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGAGCAACATCCGCCTGGCGACCACCGATCGTTACAAGGACAAGACCAGCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCATTGCCTTCTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATATCGAAGGG
CGCATCCGCACCCGCAAGTGGACCGACCAGTCCGGCGTGGAAAAGTACAGCACCGAAATCGTGGCTGAGCAAATGCAGAT
GCTGGGCTCGCGCCAGGGCATGGGCGGTGGCGGCGGCGGCGGTGGCGACGACATGGGCGGTGGCGGCGGTGGCTACGGTG
GTGGCCGCGAATCGTCGGGCGGCGGCGGTGGTTACGGCGGCGGTGCGCGCAGCGGTGGCGGCCAGGCTGCCGGTGGCCAG
CAAGGTGGTGGCGCGCGTCGCCAGCAGCAGGCTCCGTCGAACGGCTTTGAAGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643FKQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.168

100

0.497
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.47
  ssb Neisseria gonorrhoeae MS11

42.935

99.459

0.427
  ssb Neisseria meningitidis MC58

42.935

99.459

0.427