Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHW16_RS04135 Genome accession   NZ_CP074407
Coordinates   882544..883080 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain GDAR2-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 877544..888080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW16_RS04115 (KHW16_04100) soxR 879272..879736 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KHW16_RS04120 (KHW16_04105) soxS 879822..880145 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KHW16_RS04125 (KHW16_04110) pdeC 880148..881734 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  KHW16_RS04130 (KHW16_04115) yjcB 882164..882445 (+) 282 WP_001295689.1 YjcB family protein -
  KHW16_RS04135 (KHW16_04120) ssb 882544..883080 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KHW16_RS04140 (KHW16_04125) uvrA 883334..886156 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KHW16_RS04145 (KHW16_04130) yjbR 886191..886547 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KHW16_RS04150 (KHW16_04135) yjbQ 886551..886967 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KHW16_RS04155 (KHW16_04140) aphA 887078..887791 (-) 714 WP_063120048.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=491278 KHW16_RS04135 WP_000168305.1 882544..883080(-) (ssb) [Escherichia coli strain GDAR2-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=491278 KHW16_RS04135 WP_000168305.1 882544..883080(-) (ssb) [Escherichia coli strain GDAR2-2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489