Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MSA_RS10405 Genome accession   NC_021486
Coordinates   2012183..2012773 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2007183..2017773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS10370 (MSA_21450) - 2007204..2007521 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  MSA_RS10375 (MSA_21460) ruvX 2007547..2007966 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  MSA_RS10380 (MSA_21470) - 2007966..2008232 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  MSA_RS10385 (MSA_21480) spx 2008434..2008832 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  MSA_RS10390 (MSA_21490) recA 2009048..2010187 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  MSA_RS10395 (MSA_21500) cinA 2010261..2011520 (-) 1260 WP_016481338.1 competence/damage-inducible protein A Machinery gene
  MSA_RS10400 (MSA_21510) - 2011609..2012160 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  MSA_RS10405 (MSA_21520) ruvA 2012183..2012773 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  MSA_RS10410 (MSA_21530) - 2012775..2014007 (-) 1233 WP_016481339.1 MFS transporter -
  MSA_RS10415 (MSA_21540) hexB 2014039..2016018 (-) 1980 WP_079269307.1 DNA mismatch repair endonuclease MutL Machinery gene
  MSA_RS10420 (MSA_21550) - 2016238..2016441 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=49127 MSA_RS10405 WP_000272490.1 2012183..2012773(-) (ruvA) [Streptococcus agalactiae ILRI005]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=49127 MSA_RS10405 WP_000272490.1 2012183..2012773(-) (ruvA) [Streptococcus agalactiae ILRI005]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCCGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment