Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   KHA81_RS19365 Genome accession   NZ_CP074391
Coordinates   3912545..3913741 (-) Length   398 a.a.
NCBI ID   WP_015387437.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3907545..3918741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS19345 - 3907893..3909215 (-) 1323 WP_015387440.1 ABC transporter substrate-binding protein -
  KHA81_RS19350 - 3909212..3910219 (-) 1008 WP_021734062.1 ThiF family adenylyltransferase -
  KHA81_RS19355 - 3910451..3911869 (-) 1419 WP_015387438.1 HAMP domain-containing sensor histidine kinase -
  KHA81_RS19360 - 3911866..3912078 (-) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  KHA81_RS19365 htrA 3912545..3913741 (-) 1197 WP_015387437.1 S1C family serine protease Regulator
  KHA81_RS19370 vicX 3913828..3914622 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  KHA81_RS19375 yycI 3914637..3915476 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  KHA81_RS19380 yycH 3915463..3916821 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  KHA81_RS19385 walK 3916811..3918646 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42674.52 Da        Isoelectric Point: 8.2793

>NTDB_id=491265 KHA81_RS19365 WP_015387437.1 3912545..3913741(-) (htrA) [Bacillus amyloliquefaciens strain L-17]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLMPYWTGGDHGDSSKSTSRRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGHPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=491265 KHA81_RS19365 WP_015387437.1 3912545..3913741(-) (htrA) [Bacillus amyloliquefaciens strain L-17]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGGGGATACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCTTTCCTGATGCCGTACTGGACAGGCGGAGACCATGGAGACAGCAGCA
AAAGCACCAGCCGGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCGGATTCGGTAGTCGGCGTTCTCAATATCCAAAAGACTGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGTTCGCGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCGGTA
CTGAAGGTGAAGTCTGATAAAATCAAATCGGCCGCCCAGTTCGGCAATTCTGATCAAGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGACTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGAGCGGTGC
CCGTTGACTCAAACGGCGACGGACATCCGGATTGGAATGCGGAAGTGCTGCAGACCGACGCTGCGATTAATCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATTTCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
AATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCCGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTGGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTGA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCGGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.687

99.497

0.435

  htrA Streptococcus mitis NCTC 12261

41.192

96.985

0.4

  htrA Streptococcus gordonii str. Challis substr. CH1

40.153

98.241

0.394