Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   KHA81_RS19370 Genome accession   NZ_CP074391
Coordinates   3913828..3914622 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3908828..3919622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS19350 - 3909212..3910219 (-) 1008 WP_021734062.1 ThiF family adenylyltransferase -
  KHA81_RS19355 - 3910451..3911869 (-) 1419 WP_015387438.1 HAMP domain-containing sensor histidine kinase -
  KHA81_RS19360 - 3911866..3912078 (-) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  KHA81_RS19365 htrA 3912545..3913741 (-) 1197 WP_015387437.1 S1C family serine protease Regulator
  KHA81_RS19370 vicX 3913828..3914622 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  KHA81_RS19375 yycI 3914637..3915476 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  KHA81_RS19380 yycH 3915463..3916821 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  KHA81_RS19385 walK 3916811..3918646 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  KHA81_RS19390 walR 3918653..3919360 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=491266 KHA81_RS19370 WP_004393110.1 3913828..3914622(-) (vicX) [Bacillus amyloliquefaciens strain L-17]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=491266 KHA81_RS19370 WP_004393110.1 3913828..3914622(-) (vicX) [Bacillus amyloliquefaciens strain L-17]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527