Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   TTJL18_RS04165 Genome accession   NC_017587
Coordinates   756713..757183 (-) Length   156 a.a.
NCBI ID   WP_014629430.1    Uniprot ID   H9ZQX8
Organism   Thermus thermophilus JL-18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 751713..762183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS04135 (TtJL18_0830) - 752086..752445 (-) 360 WP_014629424.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  TTJL18_RS04140 (TtJL18_0831) - 752518..752913 (-) 396 WP_014629425.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  TTJL18_RS04145 (TtJL18_0832) comZ 753179..754897 (-) 1719 WP_014629426.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  TTJL18_RS04150 (TtJL18_0833) pilA/pilA3 754908..755609 (-) 702 WP_014629427.1 PilW family protein Machinery gene
  TTJL18_RS04155 (TtJL18_0834) pilA/pilA2 755606..756187 (-) 582 WP_014629428.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  TTJL18_RS04160 (TtJL18_0835) - 756184..756657 (-) 474 WP_014629429.1 GspH/FimT family protein -
  TTJL18_RS04165 (TtJL18_0836) pilA/pilA1 756713..757183 (-) 471 WP_014629430.1 GspH/FimT family protein Machinery gene
  TTJL18_RS04170 (TtJL18_0837) - 757349..758329 (+) 981 WP_014629431.1 YpdA family putative bacillithiol disulfide reductase -
  TTJL18_RS04175 (TtJL18_0838) ilvB 758485..760173 (+) 1689 WP_014629432.1 biosynthetic-type acetolactate synthase large subunit -
  TTJL18_RS04180 (TtJL18_0839) ilvN 760170..760682 (+) 513 WP_011173280.1 acetolactate synthase small subunit -
  TTJL18_RS04185 (TtJL18_0840) ilvC 760679..761692 (+) 1014 WP_014629433.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16957.76 Da        Isoelectric Point: 11.4865

>NTDB_id=49124 TTJL18_RS04165 WP_014629430.1 756713..757183(-) (pilA/pilA1) [Thermus thermophilus JL-18]
MTRRGLTLLELLLVLGILGVLLGLALPLLSPNRLALDQAARSLAAQVTRARLEAIRRNTFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATRFGQGDWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLALRAGEAVRKVVVSQQGRARVE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=49124 TTJL18_RS04165 WP_014629430.1 756713..757183(-) (pilA/pilA1) [Thermus thermophilus JL-18]
ATGACGCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCATCCTGGGGGTCCTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCGCCCAGGTGACCCGGGCAAGGCTCGAGG
CCATCCGCCGGAACACCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACTTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCGCTTCGGCCAAGGGGACTGGGCCCGGGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCCCTTCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACGC
TCGCCCTGAGGGCGGGCGAGGCGGTACGGAAGGTGGTCGTCAGCCAGCAGGGCCGGGCCCGGGTGGAGTGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(39-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9ZQX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

91.339

81.41

0.744

Multiple sequence alignment