Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MSA_RS10015 Genome accession   NC_021486
Coordinates   1932678..1933946 (+) Length   422 a.a.
NCBI ID   WP_016481296.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927678..1938946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS09980 (MSA_20670) prmA 1928074..1929027 (-) 954 WP_016481290.1 50S ribosomal protein L11 methyltransferase -
  MSA_RS09985 (MSA_20680) - 1929024..1929488 (-) 465 WP_341532801.1 MepB family protein -
  MSA_RS09990 (MSA_20690) - 1929606..1930322 (+) 717 WP_016481292.1 MerR family transcriptional regulator -
  MSA_RS09995 (MSA_20700) - 1930361..1930831 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  MSA_RS10000 (MSA_20710) - 1930803..1931261 (-) 459 WP_016481293.1 NUDIX hydrolase -
  MSA_RS10005 (MSA_20730) - 1931397..1931867 (-) 471 WP_016481294.1 DUF3013 family protein -
  MSA_RS11915 - 1932011..1932195 (-) 185 Protein_1903 hypothetical protein -
  MSA_RS10010 (MSA_20740) - 1932194..1932685 (+) 492 WP_041165706.1 GNAT family N-acetyltransferase -
  MSA_RS10015 (MSA_20750) rarA 1932678..1933946 (+) 1269 WP_016481296.1 replication-associated recombination protein A Machinery gene
  MSA_RS10025 (MSA_20770) - 1934676..1935623 (-) 948 WP_049810815.1 helix-turn-helix transcriptional regulator -
  MSA_RS10030 (MSA_20780) - 1936072..1937277 (+) 1206 WP_016481298.1 metallophosphoesterase -
  MSA_RS10935 (MSA_20790) - 1937285..1938010 (+) 726 WP_016481299.1 hypothetical protein -
  MSA_RS11460 (MSA_20800) - 1938269..1938904 (+) 636 WP_016481300.1 transposase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46614.03 Da        Isoelectric Point: 6.5117

>NTDB_id=49123 MSA_RS10015 WP_016481296.1 1932678..1933946(+) (rarA) [Streptococcus agalactiae ILRI005]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTTTNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=49123 MSA_RS10015 WP_016481296.1 1932678..1933946(+) (rarA) [Streptococcus agalactiae ILRI005]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGCTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTTACAATTGATGATGAGGCGCTAGATTTCATTGTTACCAC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59

Multiple sequence alignment