Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KGS77_RS09055 Genome accession   NZ_CP074380
Coordinates   2089123..2090727 (-) Length   534 a.a.
NCBI ID   WP_242580141.1    Uniprot ID   -
Organism   Streptomyces sp. MST-110588     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2084123..2095727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS77_RS09040 (KGS77_08940) - 2085944..2086480 (-) 537 WP_242587368.1 TetR/AcrR family transcriptional regulator -
  KGS77_RS09045 (KGS77_08945) whiG 2086686..2087522 (-) 837 WP_242580139.1 RNA polymerase sigma factor WhiG -
  KGS77_RS09050 (KGS77_08950) dprA 2087922..2089064 (-) 1143 WP_242580140.1 DNA-processing protein DprA -
  KGS77_RS09055 (KGS77_08955) comM 2089123..2090727 (-) 1605 WP_242580141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KGS77_RS09060 (KGS77_08960) - 2090727..2091083 (-) 357 Protein_1815 YraN family protein -
  KGS77_RS09065 (KGS77_08965) - 2091502..2091810 (-) 309 WP_003980220.1 DUF2469 domain-containing protein -
  KGS77_RS09070 (KGS77_08970) - 2091849..2092343 (-) 495 WP_242587370.1 NUDIX hydrolase -
  KGS77_RS09075 (KGS77_08975) lepB 2092421..2093184 (-) 764 Protein_1818 signal peptidase I -
  KGS77_RS09080 (KGS77_08980) lepB 2093372..2094469 (-) 1098 WP_242580142.1 signal peptidase I -
  KGS77_RS09085 (KGS77_08985) lepB 2094402..2095406 (-) 1005 WP_242587371.1 signal peptidase I -

Sequence

Protein


Download         Length: 534 a.a.        Molecular weight: 55546.84 Da        Isoelectric Point: 7.1959

>NTDB_id=491069 KGS77_RS09055 WP_242580141.1 2089123..2090727(-) (comM) [Streptomyces sp. MST-110588]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLIESRDRVRAAVVNSGDEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERIDPRELTELVMIGELGLDGRVRPVRGVLPAVLAAADAGYRQVVVPERTAAEAALVPGMSVLGVRS
LRQLVAVLTDEPVPEEDEPPEGAPDPLLAGLAVPGSGAGASPLGGDRPPDLADVAGQPGPRRALEVAAAGRHHIFFKGPP
GAGKTMLAERLPGLLPPLSQKESLEVTAVHSVAGTLPPGQPLVDRPPYCAPHHSATMASLVGGGTGLPRPGAVSLAHHGV
LFVDEAAECSVRVLDALRQPLESGHVVVARAAGMMRMPARFLLALAANPCPCGRHGTTGGGCECRPSSITRYRARLSGPL
MDRVDLRVAVEPVARRELVSLGKGAETTAVVAERVRAARERAAARYAGTPWTTNSEVPGHELRTRWQAAPGALRQAESDL
ESGLLTARGLDRVLRVAWTAADLAGRDRPAEEDVLWALELRTGIKRGVAAVRAI

Nucleotide


Download         Length: 1605 bp        

>NTDB_id=491069 KGS77_RS09055 WP_242580141.1 2089123..2090727(-) (comM) [Streptomyces sp. MST-110588]
ATGGGATTCGCCCGTACGTGCTCGGTCGCCCTGGTGGGCGTCGAGGGCGTGGTCGTGGAGGTCCAGGCGGACCTCGAACC
GGGTGTCGCGGCCTTCACGCTGGTCGGACTCCCCGACAAGAGCCTGATCGAGTCCCGGGACAGGGTTCGCGCCGCGGTGG
TCAATTCGGGGGACGAGTGGCCCCAGAAAAAGCTCACGGTGGGGCTCAGCCCGGCATCGGTACCCAAAAGCGGCAGCGGC
TTCGACCTCGCCGTCGCCTGCGCCGTCCTCGGTGCCGCCGAGCGCATCGACCCCCGTGAGCTGACGGAGCTGGTCATGAT
CGGCGAACTGGGGCTGGACGGCCGGGTCCGGCCCGTACGCGGAGTGCTTCCGGCCGTCCTGGCCGCCGCCGACGCCGGCT
ACCGCCAGGTCGTCGTGCCCGAGCGCACGGCGGCCGAGGCAGCGCTCGTACCGGGAATGTCCGTCCTGGGCGTACGAAGC
CTGCGGCAACTCGTCGCCGTACTCACGGACGAACCCGTCCCCGAGGAGGACGAGCCTCCGGAAGGCGCGCCCGACCCCCT
CCTGGCGGGACTGGCCGTGCCCGGCTCCGGGGCCGGCGCGAGCCCGCTCGGAGGAGACCGGCCGCCGGACCTCGCGGATG
TCGCCGGACAGCCGGGGCCCCGCAGAGCGCTGGAGGTGGCCGCGGCGGGGCGGCACCACATCTTCTTCAAGGGCCCGCCG
GGCGCAGGCAAGACCATGCTGGCCGAACGTCTTCCGGGTCTGCTGCCACCCCTGTCGCAAAAAGAGTCCCTCGAAGTCAC
AGCGGTGCACTCGGTCGCGGGGACGCTACCGCCGGGCCAGCCACTGGTGGACCGGCCGCCCTACTGCGCGCCCCACCACT
CCGCCACGATGGCCTCACTGGTGGGCGGGGGCACCGGACTGCCGCGCCCCGGAGCGGTCTCCCTGGCCCATCATGGAGTG
CTGTTCGTCGACGAGGCCGCGGAGTGCAGTGTGCGGGTGCTCGACGCGTTGCGTCAGCCGCTGGAGTCGGGGCACGTCGT
GGTCGCGCGAGCCGCCGGCATGATGCGGATGCCGGCGCGGTTCCTGCTGGCGCTGGCGGCCAATCCCTGTCCTTGTGGGC
GCCATGGGACCACGGGAGGCGGCTGCGAATGCCGGCCTTCCTCGATCACCCGCTACCGCGCCCGTCTGTCCGGGCCGCTG
ATGGACCGGGTGGACCTACGGGTCGCCGTCGAGCCCGTCGCGCGCCGTGAGCTGGTCTCGCTCGGCAAGGGAGCCGAAAC
CACCGCCGTGGTGGCCGAGCGGGTGCGAGCCGCCCGCGAACGCGCCGCCGCCCGGTACGCGGGCACCCCATGGACCACCA
ACAGTGAGGTGCCCGGCCACGAACTGCGAACCCGCTGGCAGGCTGCGCCCGGCGCGCTGCGGCAGGCGGAGAGCGACCTG
GAGAGCGGTCTGCTCACGGCCCGTGGCCTGGACCGGGTGCTGCGCGTCGCCTGGACCGCCGCCGACCTGGCGGGTCGCGA
CCGTCCCGCCGAGGAGGACGTCCTGTGGGCCCTGGAACTGCGTACGGGCATCAAACGGGGTGTGGCGGCGGTGCGTGCCA
TATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(210-416)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(426-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.445

98.502

0.408
  comM Vibrio cholerae strain A1552

41.445

98.502

0.408
  comM Vibrio campbellii strain DS40M4

40.396

94.569

0.382
  comM Haemophilus influenzae Rd KW20

38.403

98.502

0.378
  comM Legionella pneumophila str. Paris

37.951

98.689

0.375
  comM Legionella pneumophila strain ERS1305867

37.951

98.689

0.375
  comM Acinetobacter baylyi ADP1

37.931

97.753

0.371