Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IHV08_RS21640 Genome accession   NZ_CP062497
Coordinates   4184153..4184671 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain CV16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4179153..4189671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS21610 (IHV08_21610) yyaJ 4179659..4181014 (+) 1356 WP_041337895.1 MFS transporter -
  IHV08_RS21615 (IHV08_21615) maa 4181048..4181602 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  IHV08_RS21620 (IHV08_21620) yyaH 4181618..4181998 (-) 381 WP_003244460.1 VOC family protein -
  IHV08_RS21625 (IHV08_21625) ccpB 4182054..4182989 (-) 936 WP_029318523.1 transcriptional regulator CcpB -
  IHV08_RS21630 (IHV08_21630) xth 4183048..4183806 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  IHV08_RS21635 (IHV08_21635) rpsR 4183870..4184109 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  IHV08_RS21640 (IHV08_21640) ssbA 4184153..4184671 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  IHV08_RS21645 (IHV08_21645) rpsF 4184712..4184999 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  IHV08_RS21650 (IHV08_21650) ychF 4185110..4186210 (-) 1101 WP_015250781.1 redox-regulated ATPase YchF -
  IHV08_RS21655 (IHV08_21655) yyaE 4186337..4188340 (-) 2004 WP_181217613.1 molybdopterin-dependent oxidoreductase -
  IHV08_RS21660 (IHV08_21660) yyzM 4188391..4188597 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=490487 IHV08_RS21640 WP_003219228.1 4184153..4184671(-) (ssbA) [Bacillus subtilis strain CV16]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=490487 IHV08_RS21640 WP_003219228.1 4184153..4184671(-) (ssbA) [Bacillus subtilis strain CV16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAGCGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378