Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ILP76_RS13435 | Genome accession | NZ_CP062469 |
| Coordinates | 2685350..2685853 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain MRSA - AMRF 4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2665600..2689916 | 2685350..2685853 | within | 0 |
Gene organization within MGE regions
Location: 2665600..2689916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ILP76_RS13285 (ILP76_13285) | - | 2665600..2665851 (-) | 252 | WP_000466743.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| ILP76_RS13290 (ILP76_13290) | - | 2666151..2666414 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| ILP76_RS13295 (ILP76_13295) | - | 2666552..2667124 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ILP76_RS13300 (ILP76_13300) | - | 2667304..2667672 (-) | 369 | WP_000849176.1 | YxeA family protein | - |
| ILP76_RS13305 (ILP76_13305) | selX | 2668041..2668652 (-) | 612 | WP_000475329.1 | staphylococcal enterotoxin-like toxin X | - |
| ILP76_RS13310 (ILP76_13310) | - | 2668858..2669561 (+) | 704 | Protein_2598 | tyrosine-type recombinase/integrase | - |
| ILP76_RS13315 (ILP76_13315) | - | 2669600..2670538 (+) | 939 | WP_072426475.1 | Abi family protein | - |
| ILP76_RS13320 (ILP76_13320) | - | 2670662..2670856 (-) | 195 | WP_194085632.1 | hypothetical protein | - |
| ILP76_RS13325 (ILP76_13325) | - | 2671519..2672073 (+) | 555 | WP_194085688.1 | DUF4888 domain-containing protein | - |
| ILP76_RS13330 (ILP76_13330) | seb | 2672151..2672951 (-) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| ILP76_RS13335 (ILP76_13335) | - | 2673259..2673828 (-) | 570 | WP_001293089.1 | terminase small subunit | - |
| ILP76_RS13340 (ILP76_13340) | - | 2673825..2674166 (-) | 342 | WP_020977423.1 | hypothetical protein | - |
| ILP76_RS13345 (ILP76_13345) | - | 2674169..2674696 (-) | 528 | WP_031765331.1 | spore coat protein | - |
| ILP76_RS13350 (ILP76_13350) | - | 2674749..2674925 (-) | 177 | WP_017804782.1 | hypothetical protein | - |
| ILP76_RS13355 (ILP76_13355) | - | 2674925..2675503 (-) | 579 | WP_000856047.1 | hypothetical protein | - |
| ILP76_RS13360 (ILP76_13360) | - | 2675538..2675882 (-) | 345 | WP_001288441.1 | hypothetical protein | - |
| ILP76_RS13365 (ILP76_13365) | - | 2676326..2676967 (-) | 642 | WP_111724378.1 | pathogenicity island protein | - |
| ILP76_RS13370 (ILP76_13370) | - | 2676969..2677241 (-) | 273 | WP_111724377.1 | pathogenicity island protein | - |
| ILP76_RS13375 (ILP76_13375) | - | 2677228..2678031 (-) | 804 | WP_111724376.1 | bifunctional DNA primase/polymerase | - |
| ILP76_RS13380 (ILP76_13380) | - | 2678207..2679823 (-) | 1617 | WP_111724375.1 | phage resistance protein | - |
| ILP76_RS13385 (ILP76_13385) | tscT | 2679898..2680197 (-) | 300 | WP_194085633.1 | type II toxin-antitoxin system toxin TscT | - |
| ILP76_RS13390 (ILP76_13390) | tscA | 2680200..2680409 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| ILP76_RS13395 (ILP76_13395) | - | 2680402..2680548 (-) | 147 | WP_000784875.1 | hypothetical protein | - |
| ILP76_RS13400 (ILP76_13400) | - | 2680560..2680832 (-) | 273 | WP_031903009.1 | helix-turn-helix domain-containing protein | - |
| ILP76_RS13405 (ILP76_13405) | - | 2680865..2681077 (-) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| ILP76_RS13410 (ILP76_13410) | - | 2681213..2681917 (+) | 705 | WP_223297769.1 | helix-turn-helix domain-containing protein | - |
| ILP76_RS13415 (ILP76_13415) | - | 2682196..2683410 (+) | 1215 | WP_194085634.1 | tyrosine-type recombinase/integrase | - |
| ILP76_RS13420 (ILP76_13420) | - | 2683413..2684111 (+) | 699 | WP_000608381.1 | DUF3800 domain-containing protein | - |
| ILP76_RS13425 (ILP76_13425) | - | 2684098..2684724 (+) | 627 | WP_000281092.1 | hypothetical protein | - |
| ILP76_RS13430 (ILP76_13430) | rpsR | 2685056..2685298 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ILP76_RS13435 (ILP76_13435) | ssbA | 2685350..2685853 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ILP76_RS13440 (ILP76_13440) | rpsF | 2685874..2686170 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ILP76_RS13445 (ILP76_13445) | - | 2686414..2686605 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| ILP76_RS13450 (ILP76_13450) | ychF | 2686691..2687788 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ILP76_RS13455 (ILP76_13455) | - | 2687800..2688003 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| ILP76_RS13460 (ILP76_13460) | - | 2688033..2688914 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| ILP76_RS13465 (ILP76_13465) | - | 2689071..2689916 (-) | 846 | WP_001566903.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=490310 ILP76_RS13435 WP_000934799.1 2685350..2685853(-) (ssbA) [Staphylococcus aureus strain MRSA - AMRF 4]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=490310 ILP76_RS13435 WP_000934799.1 2685350..2685853(-) (ssbA) [Staphylococcus aureus strain MRSA - AMRF 4]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |