Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ILP78_RS13190 | Genome accession | NZ_CP062465 |
| Coordinates | 2630356..2630859 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain MRSA - AMRF 6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2611158..2634922 | 2630356..2630859 | within | 0 |
Gene organization within MGE regions
Location: 2611158..2634922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ILP78_RS13045 (ILP78_13045) | - | 2611158..2611421 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| ILP78_RS13050 (ILP78_13050) | - | 2611559..2612131 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ILP78_RS13055 (ILP78_13055) | - | 2612311..2612679 (-) | 369 | WP_000849176.1 | YxeA family protein | - |
| ILP78_RS13060 (ILP78_13060) | selX | 2613048..2613659 (-) | 612 | WP_000475329.1 | staphylococcal enterotoxin-like toxin X | - |
| ILP78_RS13065 (ILP78_13065) | - | 2613865..2614567 (+) | 703 | Protein_2537 | tyrosine-type recombinase/integrase | - |
| ILP78_RS13070 (ILP78_13070) | - | 2614606..2615544 (+) | 939 | WP_072426475.1 | Abi family protein | - |
| ILP78_RS13080 (ILP78_13080) | - | 2616525..2617079 (+) | 555 | WP_194085688.1 | DUF4888 domain-containing protein | - |
| ILP78_RS13085 (ILP78_13085) | seb | 2617157..2617957 (-) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| ILP78_RS13090 (ILP78_13090) | - | 2618265..2618834 (-) | 570 | WP_001293089.1 | terminase small subunit | - |
| ILP78_RS13095 (ILP78_13095) | - | 2618831..2619172 (-) | 342 | WP_020977423.1 | hypothetical protein | - |
| ILP78_RS13100 (ILP78_13100) | - | 2619175..2619702 (-) | 528 | WP_031765331.1 | spore coat protein | - |
| ILP78_RS13105 (ILP78_13105) | - | 2619755..2619931 (-) | 177 | WP_017804782.1 | hypothetical protein | - |
| ILP78_RS13110 (ILP78_13110) | - | 2619931..2620509 (-) | 579 | WP_000856047.1 | hypothetical protein | - |
| ILP78_RS13115 (ILP78_13115) | - | 2620544..2620888 (-) | 345 | WP_001288441.1 | hypothetical protein | - |
| ILP78_RS13120 (ILP78_13120) | - | 2621332..2621973 (-) | 642 | WP_111724378.1 | pathogenicity island protein | - |
| ILP78_RS13125 (ILP78_13125) | - | 2621975..2622247 (-) | 273 | WP_111724377.1 | pathogenicity island protein | - |
| ILP78_RS13130 (ILP78_13130) | - | 2622234..2623037 (-) | 804 | WP_111724376.1 | bifunctional DNA primase/polymerase | - |
| ILP78_RS13135 (ILP78_13135) | - | 2623213..2624829 (-) | 1617 | WP_111724375.1 | phage resistance protein | - |
| ILP78_RS13140 (ILP78_13140) | tscT | 2624904..2625203 (-) | 300 | WP_194085633.1 | type II toxin-antitoxin system toxin TscT | - |
| ILP78_RS13145 (ILP78_13145) | tscA | 2625206..2625415 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| ILP78_RS13150 (ILP78_13150) | - | 2625408..2625554 (-) | 147 | WP_000784875.1 | hypothetical protein | - |
| ILP78_RS13155 (ILP78_13155) | - | 2625566..2625838 (-) | 273 | WP_031903009.1 | helix-turn-helix domain-containing protein | - |
| ILP78_RS13160 (ILP78_13160) | - | 2625871..2626083 (-) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| ILP78_RS13165 (ILP78_13165) | - | 2626219..2626923 (+) | 705 | WP_223297769.1 | helix-turn-helix domain-containing protein | - |
| ILP78_RS13170 (ILP78_13170) | - | 2627202..2628416 (+) | 1215 | WP_194085634.1 | tyrosine-type recombinase/integrase | - |
| ILP78_RS13175 (ILP78_13175) | - | 2628419..2629117 (+) | 699 | WP_000608381.1 | DUF3800 domain-containing protein | - |
| ILP78_RS13180 (ILP78_13180) | - | 2629104..2629730 (+) | 627 | WP_000281092.1 | hypothetical protein | - |
| ILP78_RS13185 (ILP78_13185) | rpsR | 2630062..2630304 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ILP78_RS13190 (ILP78_13190) | ssbA | 2630356..2630859 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ILP78_RS13195 (ILP78_13195) | rpsF | 2630880..2631176 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ILP78_RS13200 (ILP78_13200) | - | 2631420..2631611 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| ILP78_RS13205 (ILP78_13205) | ychF | 2631697..2632794 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ILP78_RS13210 (ILP78_13210) | - | 2632806..2633009 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| ILP78_RS13215 (ILP78_13215) | - | 2633039..2633920 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| ILP78_RS13220 (ILP78_13220) | - | 2634077..2634922 (-) | 846 | WP_001566903.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=490222 ILP78_RS13190 WP_000934799.1 2630356..2630859(-) (ssbA) [Staphylococcus aureus strain MRSA - AMRF 6]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=490222 ILP78_RS13190 WP_000934799.1 2630356..2630859(-) (ssbA) [Staphylococcus aureus strain MRSA - AMRF 6]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |