Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF696_RS13610 | Genome accession | NZ_CP062420 |
| Coordinates | 2735429..2735899 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934769.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NAS_AN_016 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2721494..2743580 | 2735429..2735899 | within | 0 |
Gene organization within MGE regions
Location: 2721494..2743580
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF696_RS13500 (IF696_13400) | lukH | 2721494..2722546 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| IF696_RS13505 (IF696_13405) | lukG | 2722568..2723584 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| IF696_RS13510 (IF696_13410) | sph | 2723822..2724652 (-) | 831 | Protein_2624 | sphingomyelin phosphodiesterase | - |
| IF696_RS13515 (IF696_13415) | - | 2724703..2725740 (-) | 1038 | WP_000857176.1 | site-specific integrase | - |
| IF696_RS13520 (IF696_13420) | - | 2725848..2726462 (+) | 615 | WP_000191459.1 | hypothetical protein | - |
| IF696_RS13525 (IF696_13425) | - | 2726459..2726605 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| IF696_RS13530 (IF696_13430) | - | 2726641..2726823 (-) | 183 | WP_000705243.1 | hypothetical protein | - |
| IF696_RS13535 (IF696_13435) | - | 2726868..2727725 (-) | 858 | WP_000804508.1 | HIRAN domain-containing protein | - |
| IF696_RS13540 (IF696_13440) | - | 2727737..2728453 (-) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| IF696_RS13545 (IF696_13445) | - | 2728617..2728859 (+) | 243 | WP_000639922.1 | DUF739 family protein | - |
| IF696_RS13550 (IF696_13450) | - | 2728875..2729663 (+) | 789 | WP_001148565.1 | phage antirepressor KilAC domain-containing protein | - |
| IF696_RS13555 (IF696_13455) | - | 2729679..2729873 (+) | 195 | WP_001148859.1 | hypothetical protein | - |
| IF696_RS13560 (IF696_13460) | - | 2729868..2730224 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| IF696_RS13565 (IF696_13465) | - | 2730274..2730465 (+) | 192 | WP_000389906.1 | hypothetical protein | - |
| IF696_RS13570 (IF696_13470) | - | 2730467..2730694 (-) | 228 | WP_070992249.1 | hypothetical protein | - |
| IF696_RS13575 (IF696_13475) | - | 2730753..2731073 (+) | 321 | WP_001815221.1 | DUF771 domain-containing protein | - |
| IF696_RS13580 (IF696_13480) | - | 2731070..2731231 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| IF696_RS13585 (IF696_13485) | - | 2731324..2731584 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| IF696_RS13590 (IF696_13490) | - | 2731593..2731856 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF696_RS13595 (IF696_13495) | - | 2731853..2733808 (+) | 1956 | WP_001813910.1 | AAA family ATPase | - |
| IF696_RS13600 (IF696_13500) | - | 2733810..2734730 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| IF696_RS13605 (IF696_13505) | - | 2734811..2735428 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| IF696_RS13610 (IF696_13510) | ssbA | 2735429..2735899 (+) | 471 | WP_000934769.1 | single-stranded DNA-binding protein | Machinery gene |
| IF696_RS13615 (IF696_13515) | - | 2735883..2736821 (+) | 939 | WP_240140500.1 | DnaD domain-containing protein | - |
| IF696_RS13620 (IF696_13520) | - | 2736828..2737046 (+) | 219 | WP_064140628.1 | hypothetical protein | - |
| IF696_RS13625 (IF696_13525) | - | 2737055..2737459 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF696_RS13630 (IF696_13530) | - | 2737472..2737840 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF696_RS13635 (IF696_13535) | - | 2737844..2738086 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| IF696_RS13640 (IF696_13540) | - | 2738100..2738486 (+) | 387 | WP_000693615.1 | hypothetical protein | - |
| IF696_RS13645 | - | 2738483..2738677 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| IF696_RS13650 (IF696_13545) | - | 2738674..2739123 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| IF696_RS13655 (IF696_13550) | - | 2739120..2739404 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| IF696_RS13660 (IF696_13555) | - | 2739397..2739645 (+) | 249 | WP_001065083.1 | DUF1024 family protein | - |
| IF696_RS13665 (IF696_13560) | - | 2739638..2740174 (+) | 537 | WP_000185669.1 | dUTP diphosphatase | - |
| IF696_RS13670 (IF696_13565) | - | 2740211..2740417 (+) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| IF696_RS13675 (IF696_13570) | - | 2740414..2740563 (+) | 150 | WP_000595267.1 | hypothetical protein | - |
| IF696_RS13680 (IF696_13575) | - | 2740722..2741372 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| IF696_RS13685 (IF696_13580) | - | 2741372..2741572 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| IF696_RS13690 (IF696_13585) | - | 2741595..2742056 (+) | 462 | WP_000282753.1 | hypothetical protein | - |
| IF696_RS13695 (IF696_13590) | - | 2742171..2742623 (+) | 453 | WP_000406187.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| IF696_RS13700 (IF696_13595) | - | 2742639..2742983 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| IF696_RS13705 (IF696_13600) | - | 2743113..2743580 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17671.55 Da Isoelectric Point: 5.2672
>NTDB_id=490098 IF696_RS13610 WP_000934769.1 2735429..2735899(+) (ssbA) [Staphylococcus aureus strain NAS_AN_016]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=490098 IF696_RS13610 WP_000934769.1 2735429..2735899(+) (ssbA) [Staphylococcus aureus strain NAS_AN_016]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |