Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF720_RS09090 | Genome accession | NZ_CP062415 |
| Coordinates | 1785436..1785939 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain NAS_AN_150 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1765770..1789999 | 1785436..1785939 | within | 0 |
Gene organization within MGE regions
Location: 1765770..1789999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF720_RS08935 (IF720_08910) | - | 1765770..1766024 (-) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| IF720_RS08940 (IF720_08915) | - | 1766318..1766581 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| IF720_RS08945 (IF720_08920) | - | 1766719..1767291 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| IF720_RS08950 (IF720_08925) | - | 1767472..1767840 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| IF720_RS08955 (IF720_08930) | - | 1768133..1768791 (+) | 659 | Protein_1730 | site-specific integrase | - |
| IF720_RS08965 (IF720_08935) | - | 1768797..1769803 (+) | 1007 | Protein_1731 | Abi family protein | - |
| IF720_RS08970 | - | 1770567..1770746 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| IF720_RS08975 (IF720_08940) | - | 1770762..1771274 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| IF720_RS08980 (IF720_08945) | - | 1771392..1771793 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| IF720_RS08985 (IF720_08950) | - | 1771971..1772939 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| IF720_RS08990 | - | 1773086..1773169 (-) | 84 | Protein_1736 | terminase small subunit | - |
| IF720_RS08995 (IF720_08955) | - | 1773216..1773785 (-) | 570 | WP_216501388.1 | terminase small subunit | - |
| IF720_RS09000 (IF720_08960) | - | 1773782..1773994 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| IF720_RS09005 (IF720_08965) | - | 1774126..1774653 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| IF720_RS09010 (IF720_08970) | - | 1774706..1775359 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| IF720_RS09015 (IF720_08975) | - | 1775390..1775734 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| IF720_RS09020 (IF720_08980) | - | 1776442..1777083 (-) | 642 | WP_001019762.1 | hypothetical protein | - |
| IF720_RS09025 (IF720_08985) | - | 1777080..1777460 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| IF720_RS09030 (IF720_08990) | - | 1777770..1779479 (-) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| IF720_RS09035 (IF720_08995) | - | 1779493..1780362 (-) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| IF720_RS09040 (IF720_09000) | - | 1780427..1780753 (-) | 327 | WP_001103967.1 | DUF1474 family protein | - |
| IF720_RS09045 (IF720_09005) | - | 1780754..1781137 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| IF720_RS09050 (IF720_09010) | - | 1781139..1781342 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| IF720_RS09055 (IF720_09015) | - | 1781309..1781482 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| IF720_RS09060 (IF720_09020) | - | 1781494..1781766 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| IF720_RS09065 (IF720_09025) | - | 1781767..1781931 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| IF720_RS09070 (IF720_09030) | - | 1782080..1782703 (+) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| IF720_RS09075 (IF720_09035) | - | 1782864..1784078 (+) | 1215 | WP_000270135.1 | site-specific integrase | - |
| IF720_RS09080 (IF720_09040) | - | 1784191..1784910 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IF720_RS09085 (IF720_09045) | rpsR | 1785142..1785384 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| IF720_RS09090 (IF720_09050) | ssbA | 1785436..1785939 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| IF720_RS09095 (IF720_09055) | rpsF | 1785960..1786256 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| IF720_RS09100 (IF720_09060) | - | 1786500..1786691 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| IF720_RS09105 (IF720_09065) | ychF | 1786777..1787874 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| IF720_RS09110 (IF720_09070) | - | 1787886..1788089 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| IF720_RS09115 (IF720_09075) | - | 1788119..1789000 (-) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| IF720_RS09120 (IF720_09080) | - | 1789154..1789999 (-) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=489881 IF720_RS09090 WP_000934799.1 1785436..1785939(-) (ssbA) [Staphylococcus aureus strain NAS_AN_150]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=489881 IF720_RS09090 WP_000934799.1 1785436..1785939(-) (ssbA) [Staphylococcus aureus strain NAS_AN_150]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |