Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF729_RS13785 | Genome accession | NZ_CP062410 |
| Coordinates | 2776699..2777169 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain NAS_AN_205 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2755358..2782215 | 2776699..2777169 | within | 0 |
Gene organization within MGE regions
Location: 2755358..2782215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF729_RS13645 (IF729_13555) | groES | 2755358..2755642 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF729_RS13650 (IF729_13560) | groL | 2755718..2757334 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF729_RS13655 (IF729_13565) | - | 2757874..2759181 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| IF729_RS13660 (IF729_13570) | - | 2759625..2760848 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| IF729_RS13665 (IF729_13575) | lukH | 2761284..2762339 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| IF729_RS13670 (IF729_13580) | lukG | 2762361..2763377 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| IF729_RS13675 (IF729_13585) | sph | 2763615..2764445 (-) | 831 | Protein_2658 | sphingomyelin phosphodiesterase | - |
| IF729_RS13680 (IF729_13590) | - | 2764496..2765533 (-) | 1038 | WP_000857180.1 | site-specific integrase | - |
| IF729_RS13685 (IF729_13595) | - | 2765850..2766833 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| IF729_RS13690 (IF729_13600) | - | 2766933..2767115 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| IF729_RS13695 (IF729_13605) | - | 2767319..2767660 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF729_RS13700 (IF729_13610) | - | 2767666..2768598 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF729_RS13705 (IF729_13615) | - | 2768614..2769327 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF729_RS13710 (IF729_13620) | - | 2769290..2769464 (+) | 175 | Protein_2665 | transcriptional regulator | - |
| IF729_RS13715 (IF729_13625) | - | 2769461..2769724 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF729_RS13720 (IF729_13630) | - | 2769740..2769955 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF729_RS13725 (IF729_13635) | - | 2769944..2770273 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| IF729_RS13730 (IF729_13640) | - | 2770324..2771076 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| IF729_RS13735 (IF729_13645) | - | 2771092..2771289 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| IF729_RS13740 (IF729_13650) | - | 2771276..2771656 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF729_RS13745 (IF729_13655) | - | 2771711..2772034 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF729_RS13750 (IF729_13660) | - | 2772031..2772192 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| IF729_RS13755 (IF729_13665) | - | 2772287..2772589 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF729_RS13760 (IF729_13670) | - | 2772594..2772854 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF729_RS13765 (IF729_13675) | - | 2772863..2773126 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF729_RS13770 (IF729_13680) | - | 2773135..2775078 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| IF729_RS13775 (IF729_13685) | - | 2775080..2776000 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| IF729_RS13780 (IF729_13690) | - | 2776081..2776698 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| IF729_RS13785 (IF729_13695) | ssbA | 2776699..2777169 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| IF729_RS13790 (IF729_13700) | - | 2777199..2778092 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| IF729_RS13795 (IF729_13705) | - | 2778099..2778317 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| IF729_RS13800 | - | 2778326..2778730 (+) | 405 | Protein_2683 | RusA family crossover junction endodeoxyribonuclease | - |
| IF729_RS13805 (IF729_13720) | - | 2778743..2779114 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF729_RS13810 (IF729_13725) | - | 2779114..2779371 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| IF729_RS13815 (IF729_13730) | - | 2779368..2779616 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| IF729_RS13820 (IF729_13735) | - | 2779631..2779876 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| IF729_RS13825 (IF729_13740) | - | 2779873..2780409 (+) | 537 | WP_000185693.1 | dUTPase | - |
| IF729_RS13830 (IF729_13745) | - | 2780446..2780691 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| IF729_RS13835 (IF729_13750) | - | 2780688..2780894 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| IF729_RS13840 (IF729_13755) | - | 2780891..2781040 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF729_RS13845 (IF729_13760) | - | 2781040..2781240 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| IF729_RS13850 (IF729_13765) | - | 2781268..2781684 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF729_RS13855 (IF729_13770) | - | 2781916..2782215 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=489678 IF729_RS13785 WP_000934759.1 2776699..2777169(+) (ssbA) [Staphylococcus aureus strain NAS_AN_205]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=489678 IF729_RS13785 WP_000934759.1 2776699..2777169(+) (ssbA) [Staphylococcus aureus strain NAS_AN_205]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |