Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFU80_RS20860 Genome accession   NZ_CP074001
Coordinates   4273088..4273624 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4268088..4278624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU80_RS20840 (KFU80_20670) soxR 4269816..4270280 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KFU80_RS20845 (KFU80_20675) soxS 4270366..4270689 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KFU80_RS20850 (KFU80_20680) pdeC 4270692..4272278 (-) 1587 Protein_4103 c-di-GMP phosphodiesterase PdeC -
  KFU80_RS20855 (KFU80_20685) yjcB 4272708..4272989 (+) 282 WP_001295689.1 YjcB family protein -
  KFU80_RS20860 (KFU80_20690) ssb 4273088..4273624 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KFU80_RS20865 (KFU80_20695) uvrA 4273878..4276700 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KFU80_RS20870 (KFU80_20700) yjbR 4276735..4277091 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KFU80_RS20875 (KFU80_20705) yjbQ 4277095..4277511 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KFU80_RS20880 (KFU80_20710) aphA 4277622..4278335 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=489676 KFU80_RS20860 WP_000168305.1 4273088..4273624(-) (ssb) [Escherichia coli strain PM4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=489676 KFU80_RS20860 WP_000168305.1 4273088..4273624(-) (ssb) [Escherichia coli strain PM4]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489