Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SBAL117_RS19805 Genome accession   NC_017579
Coordinates   4504182..4504886 (-) Length   234 a.a.
NCBI ID   WP_006083192.1    Uniprot ID   A0A9X2WXK9
Organism   Shewanella baltica OS117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4499182..4509886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL117_RS19790 (Sbal117_3904) - 4499998..4502007 (+) 2010 WP_011847885.1 fumarate reductase flavoprotein subunit -
  SBAL117_RS19795 (Sbal117_3905) - 4502004..4502729 (+) 726 WP_006083150.1 fumarate reductase iron-sulfur subunit -
  SBAL117_RS19800 (Sbal117_3906) - 4502960..4504027 (+) 1068 WP_011847886.1 porin -
  SBAL117_RS19805 (Sbal117_3907) ssb 4504182..4504886 (-) 705 WP_006083192.1 single-stranded DNA-binding protein Machinery gene
  SBAL117_RS19810 (Sbal117_3908) - 4504996..4506363 (-) 1368 WP_006083193.1 MFS transporter -
  SBAL117_RS19815 (Sbal117_3909) uvrA 4506779..4509661 (+) 2883 WP_011847887.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25189.73 Da        Isoelectric Point: 5.2341

>NTDB_id=48958 SBAL117_RS19805 WP_006083192.1 4504182..4504886(-) (ssb) [Shewanella baltica OS117]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=48958 SBAL117_RS19805 WP_006083192.1 4504182..4504886(-) (ssb) [Shewanella baltica OS117]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCTAACATCACAGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATTGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTACCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCCCCTCAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAACA
AGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCTGCTTACCAAGCGCCAGCCGCACCGGCACAACGTCCAGCAC
CACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.571

74.786

0.483
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.558

98.718

0.41
  ssb Neisseria gonorrhoeae MS11

40.693

98.718

0.402

Multiple sequence alignment