Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF753_RS13335 | Genome accession | NZ_CP062406 |
| Coordinates | 2711698..2712168 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain NAS_NP_198 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2690358..2717181 | 2711698..2712168 | within | 0 |
Gene organization within MGE regions
Location: 2690358..2717181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF753_RS13190 (IF753_13105) | groES | 2690358..2690642 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF753_RS13195 (IF753_13110) | groL | 2690718..2692334 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF753_RS13200 (IF753_13115) | - | 2692874..2694181 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| IF753_RS13205 (IF753_13120) | - | 2694625..2695848 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| IF753_RS13210 (IF753_13125) | lukH | 2696284..2697339 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| IF753_RS13215 (IF753_13130) | lukG | 2697361..2698377 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| IF753_RS13220 (IF753_13135) | sph | 2698615..2699445 (-) | 831 | Protein_2566 | sphingomyelin phosphodiesterase | - |
| IF753_RS13225 (IF753_13140) | - | 2699496..2700533 (-) | 1038 | WP_000857180.1 | site-specific integrase | - |
| IF753_RS13230 (IF753_13145) | - | 2700596..2700838 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| IF753_RS13235 (IF753_13150) | - | 2700849..2701832 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| IF753_RS13240 (IF753_13155) | - | 2701932..2702114 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| IF753_RS13245 (IF753_13160) | - | 2702318..2702659 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF753_RS13250 (IF753_13165) | - | 2702665..2703597 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF753_RS13255 (IF753_13170) | - | 2703613..2704326 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF753_RS13260 (IF753_13175) | - | 2704289..2704463 (+) | 175 | Protein_2574 | transcriptional regulator | - |
| IF753_RS13265 (IF753_13180) | - | 2704460..2704723 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF753_RS13270 (IF753_13185) | - | 2704739..2704954 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF753_RS13275 (IF753_13190) | - | 2704943..2705272 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| IF753_RS13280 (IF753_13195) | - | 2705323..2706075 (+) | 753 | WP_061644020.1 | phage antirepressor KilAC domain-containing protein | - |
| IF753_RS13285 (IF753_13200) | - | 2706091..2706288 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| IF753_RS13290 (IF753_13205) | - | 2706275..2706655 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF753_RS13295 (IF753_13210) | - | 2706710..2707033 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF753_RS13300 (IF753_13215) | - | 2707030..2707191 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| IF753_RS13305 (IF753_13220) | - | 2707286..2707588 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF753_RS13310 (IF753_13225) | - | 2707593..2707853 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF753_RS13315 (IF753_13230) | - | 2707862..2708125 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF753_RS13320 (IF753_13235) | - | 2708134..2710077 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| IF753_RS13325 (IF753_13240) | - | 2710079..2710999 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| IF753_RS13330 (IF753_13245) | - | 2711080..2711697 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| IF753_RS13335 (IF753_13250) | ssbA | 2711698..2712168 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| IF753_RS13340 (IF753_13255) | - | 2712198..2713058 (+) | 861 | WP_240052779.1 | DnaD domain-containing protein | - |
| IF753_RS13345 (IF753_13260) | - | 2713065..2713283 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| IF753_RS13350 (IF753_13265) | - | 2713292..2713696 (+) | 405 | WP_240052780.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF753_RS13355 (IF753_13270) | - | 2713709..2714080 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF753_RS13360 (IF753_13275) | - | 2714080..2714337 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| IF753_RS13365 (IF753_13280) | - | 2714334..2714582 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| IF753_RS13370 (IF753_13285) | - | 2714597..2714842 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| IF753_RS13375 (IF753_13290) | - | 2714839..2715375 (+) | 537 | WP_000185693.1 | dUTPase | - |
| IF753_RS13380 (IF753_13295) | - | 2715412..2715657 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| IF753_RS13385 (IF753_13300) | - | 2715654..2715860 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| IF753_RS13390 (IF753_13305) | - | 2715857..2716006 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF753_RS13395 (IF753_13310) | - | 2716006..2716206 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| IF753_RS13400 (IF753_13315) | - | 2716234..2716650 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF753_RS13405 (IF753_13320) | - | 2716882..2717181 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=489506 IF753_RS13335 WP_000934759.1 2711698..2712168(+) (ssbA) [Staphylococcus aureus strain NAS_NP_198]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=489506 IF753_RS13335 WP_000934759.1 2711698..2712168(+) (ssbA) [Staphylococcus aureus strain NAS_NP_198]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |