Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   BSA_RS02030 Genome accession   NC_021485
Coordinates   356381..357046 (+) Length   221 a.a.
NCBI ID   WP_000128297.1    Uniprot ID   -
Organism   Streptococcus agalactiae 09mas018883     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 351381..362046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA_RS02005 (BSA_4070) - 351399..352067 (+) 669 WP_000394891.1 fructose-6-phosphate aldolase -
  BSA_RS02010 (BSA_4080) - 352135..353223 (+) 1089 WP_000862118.1 glycerol dehydrogenase -
  BSA_RS02015 (BSA_4090) cysK 353375..354301 (-) 927 WP_000036948.1 cysteine synthase A -
  BSA_RS02020 (BSA_4100) - 354392..355036 (-) 645 WP_001108146.1 YigZ family protein -
  BSA_RS02025 (BSA_4110) comFA/cflA 355092..356381 (+) 1290 WP_000432961.1 DEAD/DEAH box helicase Machinery gene
  BSA_RS02030 (BSA_4120) comFC/cflB 356381..357046 (+) 666 WP_000128297.1 ComF family protein Machinery gene
  BSA_RS02035 (BSA_4130) raiA 357123..357677 (+) 555 WP_000599094.1 ribosome-associated translation inhibitor RaiA -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25460.68 Da        Isoelectric Point: 9.3073

>NTDB_id=48950 BSA_RS02030 WP_000128297.1 356381..357046(+) (comFC/cflB) [Streptococcus agalactiae 09mas018883]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELGDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=48950 BSA_RS02030 WP_000128297.1 356381..357046(+) (comFC/cflB) [Streptococcus agalactiae 09mas018883]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAGGGGACAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.986

100

0.43

  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425

  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425

  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425

  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416

  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416


Multiple sequence alignment