Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IF777_RS07935 Genome accession   NZ_CP062399
Coordinates   1631720..1632166 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1626720..1637166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF777_RS07905 (IF777_07865) gcvPA 1627646..1628992 (-) 1347 WP_043854778.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF777_RS07910 (IF777_07870) gcvT 1629012..1630103 (-) 1092 WP_240053219.1 glycine cleavage system aminomethyltransferase GcvT -
  IF777_RS07915 (IF777_07875) - 1630262..1630786 (-) 525 WP_001015123.1 shikimate kinase -
  IF777_RS07920 (IF777_07880) - 1630776..1630922 (-) 147 WP_001789879.1 hypothetical protein -
  IF777_RS07925 (IF777_07885) comGF 1631019..1631516 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF777_RS07930 (IF777_07890) comGE 1631434..1631733 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF777_RS07935 (IF777_07895) comGD 1631720..1632166 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF777_RS07940 (IF777_07900) comGC 1632144..1632455 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF777_RS07945 (IF777_07905) comGB 1632469..1633539 (-) 1071 WP_000776406.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF777_RS07950 (IF777_07910) comGA 1633511..1634485 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  IF777_RS07955 (IF777_07915) - 1634537..1635160 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF777_RS07960 (IF777_07920) - 1635157..1635486 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF777_RS07965 (IF777_07925) - 1635486..1636472 (-) 987 WP_000161314.1 ROK family glucokinase -
  IF777_RS07970 (IF777_07930) - 1636469..1636672 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=489196 IF777_RS07935 WP_001788899.1 1631720..1632166(-) (comGD) [Staphylococcus aureus strain NAS_OP_143]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=489196 IF777_RS07935 WP_001788899.1 1631720..1632166(-) (comGD) [Staphylococcus aureus strain NAS_OP_143]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1