Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   IF777_RS07930 Genome accession   NZ_CP062399
Coordinates   1631434..1631733 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain NAS_OP_143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1626434..1636733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF777_RS07905 (IF777_07865) gcvPA 1627646..1628992 (-) 1347 WP_043854778.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF777_RS07910 (IF777_07870) gcvT 1629012..1630103 (-) 1092 WP_240053219.1 glycine cleavage system aminomethyltransferase GcvT -
  IF777_RS07915 (IF777_07875) - 1630262..1630786 (-) 525 WP_001015123.1 shikimate kinase -
  IF777_RS07920 (IF777_07880) - 1630776..1630922 (-) 147 WP_001789879.1 hypothetical protein -
  IF777_RS07925 (IF777_07885) comGF 1631019..1631516 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF777_RS07930 (IF777_07890) comGE 1631434..1631733 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF777_RS07935 (IF777_07895) comGD 1631720..1632166 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF777_RS07940 (IF777_07900) comGC 1632144..1632455 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF777_RS07945 (IF777_07905) comGB 1632469..1633539 (-) 1071 WP_000776406.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF777_RS07950 (IF777_07910) comGA 1633511..1634485 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  IF777_RS07955 (IF777_07915) - 1634537..1635160 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF777_RS07960 (IF777_07920) - 1635157..1635486 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF777_RS07965 (IF777_07925) - 1635486..1636472 (-) 987 WP_000161314.1 ROK family glucokinase -
  IF777_RS07970 (IF777_07930) - 1636469..1636672 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=489195 IF777_RS07930 WP_000844413.1 1631434..1631733(-) (comGE) [Staphylococcus aureus strain NAS_OP_143]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=489195 IF777_RS07930 WP_000844413.1 1631434..1631733(-) (comGE) [Staphylococcus aureus strain NAS_OP_143]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99