Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   IF777_RS07950 Genome accession   NZ_CP062399
Coordinates   1633511..1634485 (-) Length   324 a.a.
NCBI ID   WP_000697227.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_143     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628511..1639485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF777_RS07910 (IF777_07870) gcvT 1629012..1630103 (-) 1092 WP_240053219.1 glycine cleavage system aminomethyltransferase GcvT -
  IF777_RS07915 (IF777_07875) - 1630262..1630786 (-) 525 WP_001015123.1 shikimate kinase -
  IF777_RS07920 (IF777_07880) - 1630776..1630922 (-) 147 WP_001789879.1 hypothetical protein -
  IF777_RS07925 (IF777_07885) comGF 1631019..1631516 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF777_RS07930 (IF777_07890) comGE 1631434..1631733 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF777_RS07935 (IF777_07895) comGD 1631720..1632166 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF777_RS07940 (IF777_07900) comGC 1632144..1632455 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF777_RS07945 (IF777_07905) comGB 1632469..1633539 (-) 1071 WP_000776406.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF777_RS07950 (IF777_07910) comGA 1633511..1634485 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  IF777_RS07955 (IF777_07915) - 1634537..1635160 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF777_RS07960 (IF777_07920) - 1635157..1635486 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF777_RS07965 (IF777_07925) - 1635486..1636472 (-) 987 WP_000161314.1 ROK family glucokinase -
  IF777_RS07970 (IF777_07930) - 1636469..1636672 (-) 204 WP_000087561.1 YqgQ family protein -
  IF777_RS07975 (IF777_07935) - 1636653..1638116 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  IF777_RS07980 (IF777_07940) - 1638128..1638667 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  IF777_RS07985 (IF777_07945) rpmG 1638876..1639025 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36842.96 Da        Isoelectric Point: 8.8508

>NTDB_id=489199 IF777_RS07950 WP_000697227.1 1633511..1634485(-) (comGA) [Staphylococcus aureus strain NAS_OP_143]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYLF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQPQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=489199 IF777_RS07950 WP_000697227.1 1633511..1634485(-) (comGA) [Staphylococcus aureus strain NAS_OP_143]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCTTTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACCACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGTATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994