Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF777_RS01700 | Genome accession | NZ_CP062399 |
| Coordinates | 379637..380140 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain NAS_OP_143 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 355464..396542 | 379637..380140 | within | 0 |
Gene organization within MGE regions
Location: 355464..396542
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF777_RS01575 (IF777_01570) | - | 355464..356000 (-) | 537 | WP_078056058.1 | IS30 family transposase | - |
| IF777_RS01580 (IF777_01575) | - | 355981..356484 (-) | 504 | WP_000746375.1 | transposase | - |
| IF777_RS01585 (IF777_01580) | - | 356593..356949 (-) | 357 | WP_001255379.1 | cystatin-like fold lipoprotein | - |
| IF777_RS01590 (IF777_01585) | - | 357004..357594 (-) | 591 | WP_000810441.1 | hypothetical protein | - |
| IF777_RS01595 (IF777_01590) | - | 357601..358647 (-) | 1047 | WP_000247464.1 | CHAP domain-containing protein | - |
| IF777_RS01600 (IF777_01595) | - | 358637..360484 (-) | 1848 | WP_000681140.1 | hypothetical protein | - |
| IF777_RS01605 (IF777_01600) | - | 360489..361847 (-) | 1359 | WP_001251203.1 | FtsK/SpoIIIE domain-containing protein | - |
| IF777_RS01610 (IF777_01605) | - | 361901..364396 (-) | 2496 | WP_001049264.1 | ATP-binding protein | - |
| IF777_RS01615 (IF777_01610) | - | 364432..364815 (-) | 384 | WP_000358146.1 | TcpE family conjugal transfer membrane protein | - |
| IF777_RS01620 (IF777_01615) | - | 364827..365087 (-) | 261 | WP_000015641.1 | TcpD family membrane protein | - |
| IF777_RS01625 (IF777_01620) | - | 365092..366147 (-) | 1056 | WP_000692002.1 | conjugal transfer protein | - |
| IF777_RS01630 (IF777_01625) | - | 366208..367299 (-) | 1092 | WP_153155217.1 | replication initiation factor domain-containing protein | - |
| IF777_RS01635 (IF777_01630) | - | 367474..367776 (-) | 303 | WP_000386891.1 | hypothetical protein | - |
| IF777_RS01640 (IF777_01635) | - | 367790..368110 (-) | 321 | WP_000805732.1 | DUF961 family protein | - |
| IF777_RS01645 (IF777_01640) | - | 368261..368545 (-) | 285 | WP_000134540.1 | hypothetical protein | - |
| IF777_RS01650 (IF777_01645) | metE | 368615..370843 (-) | 2229 | WP_000207619.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| IF777_RS01655 (IF777_01650) | - | 370840..372681 (-) | 1842 | WP_023914664.1 | bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase | - |
| IF777_RS01660 (IF777_01655) | metC | 372650..373810 (-) | 1161 | WP_000175846.1 | cystathionine beta-lyase MetC | - |
| IF777_RS01665 (IF777_01660) | - | 373807..374910 (-) | 1104 | WP_240053282.1 | PLP-dependent transferase | - |
| IF777_RS01670 (IF777_01665) | - | 375574..376419 (+) | 846 | WP_001566903.1 | ParB/RepB/Spo0J family partition protein | - |
| IF777_RS01675 (IF777_01670) | - | 376576..377457 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| IF777_RS01680 (IF777_01675) | - | 377487..377690 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| IF777_RS01685 (IF777_01680) | ychF | 377702..378799 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| IF777_RS01690 (IF777_01685) | - | 378885..379076 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| IF777_RS01695 (IF777_01690) | rpsF | 379320..379616 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| IF777_RS01700 (IF777_01695) | ssbA | 379637..380140 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| IF777_RS01705 (IF777_01700) | rpsR | 380193..380435 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| IF777_RS01710 (IF777_01705) | - | 380701..381639 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| IF777_RS01715 (IF777_01710) | - | 381678..382377 (-) | 700 | Protein_341 | site-specific integrase | - |
| IF777_RS01720 (IF777_01715) | - | 382583..383194 (+) | 612 | WP_045173117.1 | toxin | - |
| IF777_RS01725 (IF777_01720) | - | 383563..383964 (+) | 402 | WP_000849170.1 | YxeA family protein | - |
| IF777_RS01730 (IF777_01725) | - | 384113..384685 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| IF777_RS01735 (IF777_01730) | - | 384823..385086 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| IF777_RS01740 (IF777_01735) | - | 385386..385637 (+) | 252 | WP_000466743.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| IF777_RS01745 (IF777_01740) | - | 385662..385889 (-) | 228 | WP_045173118.1 | hypothetical protein | - |
| IF777_RS01750 (IF777_01745) | - | 386067..386648 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| IF777_RS01755 (IF777_01750) | - | 386714..387097 (-) | 384 | WP_045173119.1 | hypothetical protein | - |
| IF777_RS13840 | - | 387159..387284 (+) | 126 | WP_001249529.1 | hypothetical protein | - |
| IF777_RS01760 (IF777_01755) | - | 387353..387979 (-) | 627 | WP_000746687.1 | NDxxF motif lipoprotein | - |
| IF777_RS01765 (IF777_01760) | - | 388052..389671 (-) | 1620 | WP_045173121.1 | hypothetical protein | - |
| IF777_RS01770 (IF777_01765) | ahpF | 389786..391309 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| IF777_RS01775 (IF777_01770) | ahpC | 391325..391894 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| IF777_RS01780 (IF777_01775) | nfsA | 392386..393141 (+) | 756 | WP_001289311.1 | oxygen-insensitive NADPH nitroreductase | - |
| IF777_RS01785 (IF777_01780) | - | 393221..394609 (-) | 1389 | WP_000991007.1 | L-cystine transporter | - |
| IF777_RS01790 (IF777_01785) | - | 394694..394795 (+) | 102 | WP_001789518.1 | hypothetical protein | - |
| IF777_RS01795 (IF777_01790) | - | 395586..396542 (-) | 957 | WP_000956132.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=489178 IF777_RS01700 WP_000934799.1 379637..380140(+) (ssbA) [Staphylococcus aureus strain NAS_OP_143]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=489178 IF777_RS01700 WP_000934799.1 379637..380140(+) (ssbA) [Staphylococcus aureus strain NAS_OP_143]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |