Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF700_RS13510 | Genome accession | NZ_CP062388 |
| Coordinates | 2732444..2732914 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain NAS_AN_044 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2711104..2737927 | 2732444..2732914 | within | 0 |
Gene organization within MGE regions
Location: 2711104..2737927
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF700_RS13365 (IF700_13265) | groES | 2711104..2711388 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF700_RS13370 (IF700_13270) | groL | 2711464..2713080 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF700_RS13375 (IF700_13275) | - | 2713620..2714927 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| IF700_RS13380 (IF700_13280) | - | 2715371..2716594 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| IF700_RS13385 (IF700_13285) | lukH | 2717030..2718085 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| IF700_RS13390 (IF700_13290) | lukG | 2718107..2719123 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| IF700_RS13395 (IF700_13295) | sph | 2719361..2720191 (-) | 831 | Protein_2601 | sphingomyelin phosphodiesterase | - |
| IF700_RS13400 (IF700_13300) | - | 2720242..2721279 (-) | 1038 | WP_000857180.1 | site-specific integrase | - |
| IF700_RS13405 (IF700_13305) | - | 2721342..2721584 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| IF700_RS13410 (IF700_13310) | - | 2721595..2722578 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| IF700_RS13415 (IF700_13315) | - | 2722678..2722860 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| IF700_RS13420 (IF700_13320) | - | 2723064..2723405 (-) | 342 | WP_240017469.1 | hypothetical protein | - |
| IF700_RS13425 (IF700_13325) | - | 2723411..2724343 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF700_RS13430 (IF700_13330) | - | 2724359..2725072 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF700_RS13435 (IF700_13335) | - | 2725035..2725209 (+) | 175 | Protein_2609 | transcriptional regulator | - |
| IF700_RS13440 (IF700_13340) | - | 2725206..2725469 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF700_RS13445 (IF700_13345) | - | 2725485..2725700 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF700_RS13450 (IF700_13350) | - | 2725689..2726018 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| IF700_RS13455 (IF700_13355) | - | 2726069..2726821 (+) | 753 | WP_061644020.1 | phage antirepressor KilAC domain-containing protein | - |
| IF700_RS13460 (IF700_13360) | - | 2726837..2727034 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| IF700_RS13465 (IF700_13365) | - | 2727021..2727401 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF700_RS13470 (IF700_13370) | - | 2727456..2727779 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF700_RS13475 (IF700_13375) | - | 2727776..2727937 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| IF700_RS13480 (IF700_13380) | - | 2728032..2728334 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF700_RS13485 (IF700_13385) | - | 2728339..2728599 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF700_RS13490 (IF700_13390) | - | 2728608..2728871 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF700_RS13495 (IF700_13395) | - | 2728880..2730823 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| IF700_RS13500 (IF700_13400) | - | 2730825..2731745 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| IF700_RS13505 (IF700_13405) | - | 2731826..2732443 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| IF700_RS13510 (IF700_13410) | ssbA | 2732444..2732914 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| IF700_RS13515 (IF700_13415) | - | 2732944..2733804 (+) | 861 | WP_196580602.1 | DnaD domain-containing protein | - |
| IF700_RS13520 (IF700_13420) | - | 2733811..2734029 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| IF700_RS13525 (IF700_13425) | - | 2734038..2734442 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF700_RS13530 (IF700_13430) | - | 2734455..2734826 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF700_RS13535 (IF700_13435) | - | 2734826..2735083 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| IF700_RS13540 (IF700_13440) | - | 2735080..2735328 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| IF700_RS13545 (IF700_13445) | - | 2735343..2735588 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| IF700_RS13550 (IF700_13450) | - | 2735585..2736121 (+) | 537 | WP_000185693.1 | dUTPase | - |
| IF700_RS13555 (IF700_13455) | - | 2736158..2736403 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| IF700_RS13560 (IF700_13460) | - | 2736400..2736606 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| IF700_RS13565 (IF700_13465) | - | 2736603..2736752 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF700_RS13570 (IF700_13470) | - | 2736752..2736952 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| IF700_RS13575 (IF700_13475) | - | 2736980..2737396 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF700_RS13580 (IF700_13480) | - | 2737628..2737927 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=489010 IF700_RS13510 WP_000934759.1 2732444..2732914(+) (ssbA) [Staphylococcus aureus strain NAS_AN_044]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=489010 IF700_RS13510 WP_000934759.1 2732444..2732914(+) (ssbA) [Staphylococcus aureus strain NAS_AN_044]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |