Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF707_RS03955 Genome accession   NZ_CP062376
Coordinates   797908..798780 (-) Length   290 a.a.
NCBI ID   WP_045177422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_099     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 792908..803780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF707_RS03945 (IF707_03945) trmFO 794196..795503 (-) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF707_RS03950 (IF707_03950) topA 795659..797734 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  IF707_RS03955 (IF707_03955) dprA 797908..798780 (-) 873 WP_045177422.1 DNA-processing protein DprA Machinery gene
  IF707_RS03960 (IF707_03960) fmhC 798953..800197 (-) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  IF707_RS03965 (IF707_03965) - 800225..801343 (-) 1119 WP_001041673.1 LysM peptidoglycan-binding domain-containing protein -
  IF707_RS03970 (IF707_03970) sucD 801570..802478 (-) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  IF707_RS03975 (IF707_03975) sucC 802500..803666 (-) 1167 WP_001020799.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33554.95 Da        Isoelectric Point: 9.5094

>NTDB_id=488743 IF707_RS03955 WP_045177422.1 797908..798780(-) (dprA) [Staphylococcus aureus strain NAS_AN_099]
MIKLFLLKLYWAHFSTKQIHQFLMAYSNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=488743 IF707_RS03955 WP_045177422.1 797908..798780(-) (dprA) [Staphylococcus aureus strain NAS_AN_099]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATTC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993