Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF712_RS13465 | Genome accession | NZ_CP062368 |
| Coordinates | 2728939..2729409 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain NAS_AN_115 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2707599..2734455 | 2728939..2729409 | within | 0 |
Gene organization within MGE regions
Location: 2707599..2734455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF712_RS13320 (IF712_13245) | groES | 2707599..2707883 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF712_RS13325 (IF712_13250) | groL | 2707959..2709575 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF712_RS13330 (IF712_13255) | - | 2710115..2711422 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| IF712_RS13335 (IF712_13260) | - | 2711866..2713089 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| IF712_RS13340 (IF712_13265) | lukH | 2713525..2714580 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| IF712_RS13345 (IF712_13270) | lukG | 2714602..2715618 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| IF712_RS13350 (IF712_13275) | sph | 2715856..2716686 (-) | 831 | Protein_2592 | sphingomyelin phosphodiesterase | - |
| IF712_RS13355 (IF712_13280) | - | 2716737..2717774 (-) | 1038 | WP_000857180.1 | site-specific integrase | - |
| IF712_RS13360 (IF712_13285) | - | 2717837..2718079 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| IF712_RS13365 (IF712_13290) | - | 2718090..2719073 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| IF712_RS13370 (IF712_13295) | - | 2719173..2719355 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| IF712_RS13375 (IF712_13300) | - | 2719559..2719900 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF712_RS13380 (IF712_13305) | - | 2719906..2720838 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF712_RS13385 (IF712_13310) | - | 2720854..2721567 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF712_RS13390 (IF712_13315) | - | 2721530..2721704 (+) | 175 | Protein_2600 | transcriptional regulator | - |
| IF712_RS13395 (IF712_13320) | - | 2721701..2721964 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF712_RS13400 (IF712_13325) | - | 2721980..2722195 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF712_RS13405 (IF712_13330) | - | 2722184..2722513 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| IF712_RS13410 (IF712_13335) | - | 2722564..2723316 (+) | 753 | WP_061644020.1 | phage antirepressor KilAC domain-containing protein | - |
| IF712_RS13415 (IF712_13340) | - | 2723332..2723529 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| IF712_RS13420 (IF712_13345) | - | 2723516..2723896 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF712_RS13425 (IF712_13350) | - | 2723951..2724274 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF712_RS13430 (IF712_13355) | - | 2724271..2724432 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| IF712_RS13435 (IF712_13360) | - | 2724527..2724829 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF712_RS13440 (IF712_13365) | - | 2724834..2725094 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF712_RS13445 (IF712_13370) | - | 2725103..2725366 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF712_RS13450 (IF712_13375) | - | 2725375..2727318 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| IF712_RS13455 (IF712_13380) | - | 2727320..2728240 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| IF712_RS13460 (IF712_13385) | - | 2728321..2728938 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| IF712_RS13465 (IF712_13390) | ssbA | 2728939..2729409 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| IF712_RS13470 (IF712_13395) | - | 2729439..2730332 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| IF712_RS13475 (IF712_13400) | - | 2730339..2730557 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| IF712_RS13480 (IF712_13405) | - | 2730566..2730970 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF712_RS13485 (IF712_13410) | - | 2730983..2731354 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF712_RS13490 (IF712_13415) | - | 2731354..2731611 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| IF712_RS13495 (IF712_13420) | - | 2731608..2731856 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| IF712_RS13500 (IF712_13425) | - | 2731871..2732116 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| IF712_RS13505 (IF712_13430) | - | 2732113..2732649 (+) | 537 | WP_000185693.1 | dUTPase | - |
| IF712_RS13510 (IF712_13435) | - | 2732686..2732931 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| IF712_RS13515 (IF712_13440) | - | 2732928..2733134 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| IF712_RS13520 (IF712_13445) | - | 2733131..2733280 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF712_RS13525 (IF712_13450) | - | 2733280..2733480 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| IF712_RS13530 (IF712_13455) | - | 2733508..2733924 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF712_RS13535 (IF712_13460) | - | 2734156..2734455 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=488637 IF712_RS13465 WP_000934759.1 2728939..2729409(+) (ssbA) [Staphylococcus aureus strain NAS_AN_115]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=488637 IF712_RS13465 WP_000934759.1 2728939..2729409(+) (ssbA) [Staphylococcus aureus strain NAS_AN_115]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |