Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF713_RS08955 Genome accession   NZ_CP062366
Coordinates   1741475..1741978 (-) Length   167 a.a.
NCBI ID   WP_240021916.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1736475..1746978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF713_RS08920 (IF713_08910) - 1736529..1736792 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  IF713_RS08925 (IF713_08915) - 1736930..1737502 (-) 573 WP_000769720.1 PepSY domain-containing protein -
  IF713_RS08930 (IF713_08920) - 1737683..1738051 (-) 369 WP_000849177.1 YxeA family protein -
  IF713_RS08935 (IF713_08925) selX 1738420..1739031 (-) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  IF713_RS08940 (IF713_08930) - 1739231..1739938 (+) 708 Protein_1723 tyrosine-type recombinase/integrase -
  IF713_RS08945 (IF713_08935) - 1739977..1740915 (+) 939 WP_001822249.1 Abi family protein -
  IF713_RS08950 (IF713_08940) rpsR 1741181..1741423 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  IF713_RS08955 (IF713_08945) ssbA 1741475..1741978 (-) 504 WP_240021916.1 single-stranded DNA-binding protein Machinery gene
  IF713_RS08960 (IF713_08950) rpsF 1741999..1742295 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  IF713_RS08965 (IF713_08955) - 1742539..1742730 (+) 192 WP_001052483.1 hypothetical protein -
  IF713_RS08970 (IF713_08960) ychF 1742816..1743913 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  IF713_RS08975 (IF713_08965) - 1743925..1744128 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  IF713_RS08980 (IF713_08970) - 1744158..1745039 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  IF713_RS08985 (IF713_08975) - 1745196..1746041 (-) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18512.09 Da        Isoelectric Point: 4.7305

>NTDB_id=488585 IF713_RS08955 WP_240021916.1 1741475..1741978(-) (ssbA) [Staphylococcus aureus strain NAS_AN_123]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQSEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=488585 IF713_RS08955 WP_240021916.1 1741475..1741978(-) (ssbA) [Staphylococcus aureus strain NAS_AN_123]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAGTGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365