Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SERAS13_RS22680 Genome accession   NC_017573
Coordinates   4907568..4908104 (-) Length   178 a.a.
NCBI ID   WP_006317814.1    Uniprot ID   -
Organism   Serratia sp. AS13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4902568..4913104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SERAS13_RS22655 (SerAS13_4538) - 4903928..4904335 (-) 408 WP_013814728.1 VOC family protein -
  SERAS13_RS22660 (SerAS13_4539) - 4904383..4905051 (-) 669 WP_013814729.1 glutathione S-transferase family protein -
  SERAS13_RS26745 - 4905069..4905212 (+) 144 WP_275426053.1 hypothetical protein -
  SERAS13_RS22665 (SerAS13_4540) - 4905391..4905651 (+) 261 WP_013814730.1 YdgH/BhsA/McbA-like domain containing protein -
  SERAS13_RS22670 (SerAS13_4541) - 4905708..4906625 (-) 918 WP_013814731.1 LysR family transcriptional regulator -
  SERAS13_RS22675 (SerAS13_4542) - 4906755..4907504 (+) 750 WP_013814732.1 3-oxoacyl-ACP reductase family protein -
  SERAS13_RS22680 (SerAS13_4543) ssb 4907568..4908104 (-) 537 WP_006317814.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SERAS13_RS22685 (SerAS13_4544) uvrA 4908382..4911216 (+) 2835 WP_013814733.1 excinuclease ABC subunit UvrA -
  SERAS13_RS22695 (SerAS13_4545) - 4911440..4912492 (+) 1053 WP_013814734.1 NAD(P)-dependent alcohol dehydrogenase -
  SERAS13_RS22700 (SerAS13_4546) maa 4912527..4913084 (-) 558 WP_013814735.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18730.73 Da        Isoelectric Point: 5.2456

>NTDB_id=48854 SERAS13_RS22680 WP_006317814.1 4907568..4908104(-) (ssb) [Serratia sp. AS13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQAAGGQGGWGQPQQPQGGNQFSGGQQARPAQNNA
PAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=48854 SERAS13_RS22680 WP_006317814.1 4907568..4908104(-) (ssb) [Serratia sp. AS13]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACTGGCGAGCAGAAAGAAAAAACCG
AGTGGCACCGCGTTGTGTTGTTCGGCAAGCTGGCTGAAGTTGCGGGCGAGTATCTGCGTAAAGGTTCCCAGGTGTATATC
GAAGGTGCCCTGCAGACCCGTAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAAGGCGGCGGCGCACCTGCAGGCGGTGGTCAGGCAGCAGGCGGCCAGGGCG
GTTGGGGCCAGCCTCAGCAACCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCGCGCCCAGCGCAGAACAACGCG
CCGGCAGCCAGCAGCAACGAACCGCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.284

100

0.579
  ssb Neisseria meningitidis MC58

45.213

100

0.478
  ssb Neisseria gonorrhoeae MS11

45.213

100

0.478

Multiple sequence alignment