Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF722_RS01800 | Genome accession | NZ_CP062360 |
| Coordinates | 396005..396508 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain NAS_AN_157 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 396005..416670 | 396005..396508 | within | 0 |
Gene organization within MGE regions
Location: 396005..416670
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF722_RS01800 (IF722_01780) | ssbA | 396005..396508 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| IF722_RS01805 (IF722_01785) | rpsR | 396560..396802 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| IF722_RS01810 (IF722_01790) | - | 397041..397940 (-) | 900 | WP_001797289.1 | Abi family protein | - |
| IF722_RS01815 (IF722_01795) | - | 397942..399151 (-) | 1210 | Protein_359 | tyrosine-type recombinase/integrase | - |
| IF722_RS01820 (IF722_01800) | - | 399177..400100 (-) | 924 | WP_050436923.1 | helix-turn-helix transcriptional regulator | - |
| IF722_RS01825 (IF722_01805) | - | 400207..400407 (+) | 201 | WP_001033058.1 | helix-turn-helix domain-containing protein | - |
| IF722_RS01830 (IF722_01810) | - | 400446..400658 (+) | 213 | WP_033863184.1 | helix-turn-helix transcriptional regulator | - |
| IF722_RS01835 (IF722_01815) | - | 400659..400930 (+) | 272 | Protein_363 | helix-turn-helix domain-containing protein | - |
| IF722_RS01840 (IF722_01820) | - | 400942..401088 (+) | 147 | WP_000784873.1 | hypothetical protein | - |
| IF722_RS01845 (IF722_01825) | - | 401081..401290 (+) | 210 | WP_001058490.1 | hypothetical protein | - |
| IF722_RS01850 (IF722_01830) | - | 401293..401598 (+) | 306 | WP_240025275.1 | DUF1474 family protein | - |
| IF722_RS01855 (IF722_01835) | - | 401673..403286 (+) | 1614 | WP_106875302.1 | phage resistance protein | - |
| IF722_RS01860 (IF722_01840) | - | 403457..404260 (+) | 804 | WP_033863177.1 | bifunctional DNA primase/polymerase | - |
| IF722_RS01865 (IF722_01845) | - | 404247..404519 (+) | 273 | WP_001149387.1 | hypothetical protein | - |
| IF722_RS01870 (IF722_01850) | - | 404521..405162 (+) | 642 | WP_072490956.1 | pathogenicity island protein | - |
| IF722_RS01875 (IF722_01855) | - | 405611..405952 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| IF722_RS01880 (IF722_01860) | - | 405983..406636 (+) | 654 | WP_000214171.1 | hypothetical protein | - |
| IF722_RS01885 (IF722_01865) | - | 406689..407216 (+) | 528 | WP_000771364.1 | spore coat protein | - |
| IF722_RS01890 (IF722_01870) | - | 407348..407560 (+) | 213 | WP_025174984.1 | hypothetical protein | - |
| IF722_RS01895 (IF722_01875) | - | 407557..408126 (+) | 570 | WP_240025277.1 | terminase small subunit | - |
| IF722_RS01900 (IF722_01880) | - | 408555..409073 (+) | 519 | WP_000624990.1 | hypothetical protein | - |
| IF722_RS01905 (IF722_01885) | - | 409070..409498 (+) | 429 | WP_000591858.1 | hypothetical protein | - |
| IF722_RS01910 (IF722_01890) | - | 409485..410264 (+) | 780 | WP_000705255.1 | hypothetical protein | - |
| IF722_RS01915 (IF722_01895) | - | 410501..410728 (+) | 228 | WP_033863179.1 | hypothetical protein | - |
| IF722_RS01920 | - | 410800..410898 (+) | 99 | Protein_380 | hypothetical protein | - |
| IF722_RS01925 (IF722_01900) | - | 411791..412729 (-) | 939 | WP_072491317.1 | Abi family protein | - |
| IF722_RS01930 (IF722_01905) | - | 412780..413480 (-) | 701 | Protein_382 | tyrosine-type recombinase/integrase | - |
| IF722_RS01935 (IF722_01910) | selX | 413680..414291 (+) | 612 | WP_072490954.1 | staphylococcal enterotoxin-like toxin X | - |
| IF722_RS01940 (IF722_01915) | - | 414669..414968 (+) | 300 | Protein_384 | YxeA family protein | - |
| IF722_RS01945 (IF722_01920) | - | 415149..415721 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| IF722_RS01950 (IF722_01925) | - | 415859..416122 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| IF722_RS01955 (IF722_01930) | - | 416416..416670 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=488431 IF722_RS01800 WP_000934799.1 396005..396508(+) (ssbA) [Staphylococcus aureus strain NAS_AN_157]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=488431 IF722_RS01800 WP_000934799.1 396005..396508(+) (ssbA) [Staphylococcus aureus strain NAS_AN_157]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |