Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K751_RS04920 Genome accession   NC_021218
Coordinates   1030553..1031104 (-) Length   183 a.a.
NCBI ID   WP_015642652.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025553..1036104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS04900 (K751_03060) - 1025588..1026724 (+) 1137 WP_015642659.1 NAD-binding protein -
  K751_RS08610 - 1026740..1026994 (-) 255 WP_021299763.1 hypothetical protein -
  K751_RS04910 - 1027200..1027448 (-) 249 Protein_967 hypothetical protein -
  K751_RS08730 - 1027450..1027724 (-) 275 Protein_968 hypothetical protein -
  K751_RS08615 - 1027684..1028181 (-) 498 WP_015642655.1 hypothetical protein -
  K751_RS04915 (K751_03035) - 1028162..1030204 (-) 2043 WP_015642654.1 DUF3519 domain-containing protein -
  K751_RS04920 (K751_03025) ruvA 1030553..1031104 (-) 552 WP_015642652.1 Holliday junction branch migration protein RuvA Machinery gene
  K751_RS04925 (K751_03020) - 1031130..1032974 (-) 1845 WP_015642651.1 FapA family protein -
  K751_RS04930 (K751_03015) murJ 1033067..1034527 (+) 1461 WP_015642650.1 murein biosynthesis integral membrane protein MurJ -
  K751_RS04935 (K751_03010) cysS 1034528..1035925 (+) 1398 WP_015642649.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20231.87 Da        Isoelectric Point: 9.7671

>NTDB_id=48839 K751_RS04920 WP_015642652.1 1030553..1031104(-) (ruvA) [Helicobacter pylori UM066]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=48839 K751_RS04920 WP_015642652.1 1030553..1031104(-) (ruvA) [Helicobacter pylori UM066]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGATTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGAGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAACGAATTTGAAAGCATTATCGCCACCAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAACAGACCCGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

96.721

100

0.967
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361

Multiple sequence alignment