Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF736_RS13570 | Genome accession | NZ_CP062350 |
| Coordinates | 2724316..2724786 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NAS_AN_250 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2707343..2729308 | 2724316..2724786 | within | 0 |
Gene organization within MGE regions
Location: 2707343..2729308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF736_RS13450 (IF736_13370) | - | 2707343..2708188 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| IF736_RS13455 (IF736_13375) | - | 2708560..2709783 (-) | 1224 | WP_000206640.1 | ArgE/DapE family deacylase | - |
| IF736_RS13460 (IF736_13380) | lukH | 2710216..2711271 (+) | 1056 | WP_031588767.1 | bi-component leukocidin LukGH subunit H | - |
| IF736_RS13465 (IF736_13385) | lukG | 2711293..2712309 (+) | 1017 | WP_000595394.1 | bi-component leukocidin LukGH subunit G | - |
| IF736_RS13470 (IF736_13390) | sph | 2712547..2713377 (-) | 831 | Protein_2619 | sphingomyelin phosphodiesterase | - |
| IF736_RS13475 (IF736_13395) | - | 2713428..2714465 (-) | 1038 | WP_000857176.1 | site-specific integrase | - |
| IF736_RS13480 (IF736_13400) | - | 2714573..2715187 (+) | 615 | WP_000191460.1 | hypothetical protein | - |
| IF736_RS13485 (IF736_13405) | - | 2715184..2715330 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| IF736_RS13490 (IF736_13410) | - | 2715366..2715548 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| IF736_RS13495 (IF736_13415) | - | 2715748..2716518 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| IF736_RS13500 (IF736_13420) | - | 2716677..2716901 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| IF736_RS13505 (IF736_13425) | - | 2716919..2717179 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| IF736_RS13510 (IF736_13430) | - | 2717203..2717742 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| IF736_RS13515 (IF736_13435) | - | 2717799..2718551 (+) | 753 | WP_024928163.1 | phage antirepressor KilAC domain-containing protein | - |
| IF736_RS13520 (IF736_13440) | - | 2718567..2718764 (+) | 198 | Protein_2629 | hypothetical protein | - |
| IF736_RS13525 (IF736_13445) | - | 2718795..2718935 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| IF736_RS13530 (IF736_13450) | - | 2718950..2719582 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| IF736_RS13535 (IF736_13455) | - | 2719641..2719961 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| IF736_RS13540 (IF736_13460) | - | 2719958..2720119 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| IF736_RS13545 (IF736_13465) | - | 2720212..2720472 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| IF736_RS13550 (IF736_13470) | - | 2720481..2720744 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF736_RS13555 (IF736_13475) | - | 2720773..2722695 (+) | 1923 | WP_240018998.1 | AAA family ATPase | - |
| IF736_RS13560 (IF736_13480) | - | 2722697..2723617 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF736_RS13565 (IF736_13485) | - | 2723698..2724315 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| IF736_RS13570 (IF736_13490) | ssbA | 2724316..2724786 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| IF736_RS13575 (IF736_13495) | - | 2724816..2725700 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| IF736_RS13580 (IF736_13500) | - | 2725707..2725925 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| IF736_RS13585 (IF736_13505) | - | 2725934..2726338 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF736_RS13590 (IF736_13510) | - | 2726351..2726722 (+) | 372 | WP_240018950.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF736_RS13595 (IF736_13515) | - | 2726723..2726971 (+) | 249 | WP_001126836.1 | phi PVL orf 51-like protein | - |
| IF736_RS13600 (IF736_13520) | - | 2727036..2727485 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| IF736_RS13605 (IF736_13525) | - | 2727482..2727766 (+) | 285 | WP_001105620.1 | hypothetical protein | - |
| IF736_RS13610 (IF736_13530) | - | 2727759..2728013 (+) | 255 | WP_000370292.1 | DUF1024 family protein | - |
| IF736_RS13615 (IF736_13535) | - | 2728133..2728333 (+) | 201 | WP_000265042.1 | DUF1514 family protein | - |
| IF736_RS13620 (IF736_13540) | - | 2728361..2728777 (+) | 417 | WP_000590124.1 | hypothetical protein | - |
| IF736_RS13625 (IF736_13545) | - | 2729009..2729308 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=488259 IF736_RS13570 WP_000934770.1 2724316..2724786(+) (ssbA) [Staphylococcus aureus strain NAS_AN_250]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=488259 IF736_RS13570 WP_000934770.1 2724316..2724786(+) (ssbA) [Staphylococcus aureus strain NAS_AN_250]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |