Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF764_RS13375 | Genome accession | NZ_CP062326 |
| Coordinates | 2719601..2720071 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain NAS_OP_043 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2696049..2725403 | 2719601..2720071 | within | 0 |
Gene organization within MGE regions
Location: 2696049..2725403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF764_RS13220 (IF764_13170) | - | 2696049..2696675 (-) | 627 | WP_000522375.1 | nitroreductase family protein | - |
| IF764_RS13225 (IF764_13175) | - | 2696872..2698077 (+) | 1206 | WP_000120327.1 | SdrH family protein | - |
| IF764_RS13230 (IF764_13180) | mroQ | 2698102..2698845 (-) | 744 | WP_000197627.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| IF764_RS13235 (IF764_13185) | groES | 2699020..2699304 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF764_RS13240 (IF764_13190) | groL | 2699380..2700996 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF764_RS13245 (IF764_13195) | - | 2701528..2702835 (-) | 1308 | WP_001045070.1 | TrkH family potassium uptake protein | - |
| IF764_RS13250 (IF764_13200) | - | 2703288..2704511 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| IF764_RS13255 (IF764_13205) | - | 2704942..2705997 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| IF764_RS13260 (IF764_13210) | - | 2706019..2707038 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| IF764_RS13265 (IF764_13215) | sph | 2707295..2708125 (-) | 831 | Protein_2577 | sphingomyelin phosphodiesterase | - |
| IF764_RS13270 (IF764_13220) | - | 2708176..2709213 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| IF764_RS13275 (IF764_13225) | - | 2709272..2709736 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| IF764_RS13280 (IF764_13230) | - | 2709836..2710018 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| IF764_RS13285 (IF764_13235) | - | 2710222..2710563 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF764_RS13290 (IF764_13240) | - | 2710569..2711501 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF764_RS13295 (IF764_13245) | - | 2711517..2712230 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF764_RS13300 (IF764_13250) | - | 2712193..2712366 (+) | 174 | WP_031908048.1 | hypothetical protein | - |
| IF764_RS13305 (IF764_13255) | - | 2712363..2712608 (+) | 246 | WP_043859301.1 | helix-turn-helix transcriptional regulator | - |
| IF764_RS13310 (IF764_13260) | - | 2712642..2712857 (+) | 216 | WP_240029565.1 | DUF2829 domain-containing protein | - |
| IF764_RS13315 (IF764_13265) | - | 2712846..2713175 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| IF764_RS13320 (IF764_13270) | - | 2713226..2713978 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| IF764_RS13325 (IF764_13275) | - | 2713994..2714191 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| IF764_RS13330 (IF764_13280) | - | 2714178..2714558 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| IF764_RS13335 (IF764_13285) | - | 2714613..2714936 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF764_RS13340 (IF764_13290) | - | 2714933..2715094 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| IF764_RS13345 (IF764_13295) | - | 2715189..2715491 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF764_RS13350 (IF764_13300) | - | 2715496..2715756 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF764_RS13355 (IF764_13305) | - | 2715765..2716028 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF764_RS13360 (IF764_13310) | - | 2716037..2717980 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| IF764_RS13365 (IF764_13315) | - | 2717982..2718902 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF764_RS13370 (IF764_13320) | - | 2718983..2719600 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| IF764_RS13375 (IF764_13325) | ssbA | 2719601..2720071 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| IF764_RS13380 (IF764_13330) | - | 2720101..2720994 (+) | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| IF764_RS13385 (IF764_13335) | - | 2721001..2721219 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF764_RS13390 (IF764_13340) | - | 2721228..2721632 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF764_RS13395 (IF764_13345) | - | 2721645..2722013 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF764_RS13400 (IF764_13350) | - | 2722017..2722259 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| IF764_RS13405 (IF764_13355) | - | 2722274..2722528 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| IF764_RS13410 (IF764_13360) | - | 2722515..2722685 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| IF764_RS13415 (IF764_13365) | - | 2722678..2723214 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| IF764_RS13420 (IF764_13370) | - | 2723251..2723496 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF764_RS13425 (IF764_13375) | - | 2723493..2723699 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF764_RS13430 (IF764_13380) | - | 2723696..2724082 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF764_RS13435 (IF764_13385) | - | 2724079..2724228 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF764_RS13440 (IF764_13390) | - | 2724228..2724428 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| IF764_RS13445 (IF764_13395) | - | 2724456..2724872 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF764_RS13450 (IF764_13400) | - | 2725104..2725403 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=487806 IF764_RS13375 WP_000610648.1 2719601..2720071(+) (ssbA) [Staphylococcus aureus strain NAS_OP_043]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=487806 IF764_RS13375 WP_000610648.1 2719601..2720071(+) (ssbA) [Staphylococcus aureus strain NAS_OP_043]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |