Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   KEF49_RS12865 Genome accession   NZ_CP073635
Coordinates   2553082..2553777 (-) Length   231 a.a.
NCBI ID   WP_065981989.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2548082..2558777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS12835 (KEF49_12835) - 2548096..2548899 (-) 804 WP_212098547.1 M23 family metallopeptidase -
  KEF49_RS12840 (KEF49_12840) minD 2549028..2549831 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  KEF49_RS12845 (KEF49_12845) minC 2549834..2550514 (-) 681 WP_212098550.1 septum site-determining protein MinC -
  KEF49_RS12850 (KEF49_12850) mreD 2550568..2551086 (-) 519 WP_212098553.1 rod shape-determining protein MreD -
  KEF49_RS12855 (KEF49_12855) mreC 2551083..2551946 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  KEF49_RS12860 (KEF49_12860) mreB 2551977..2552990 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  KEF49_RS12865 (KEF49_12865) ysxA/radC 2553082..2553777 (-) 696 WP_065981989.1 DNA repair protein RadC Machinery gene
  KEF49_RS12870 (KEF49_12870) - 2553809..2554378 (-) 570 WP_212098556.1 Maf family protein -
  KEF49_RS12875 (KEF49_12875) - 2554520..2555521 (-) 1002 WP_212098559.1 SPOR domain-containing protein -
  KEF49_RS12880 (KEF49_12880) comC 2555648..2556400 (-) 753 WP_212098562.1 A24 family peptidase Machinery gene
  KEF49_RS12885 (KEF49_12885) - 2556538..2557830 (-) 1293 WP_212098564.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26052.26 Da        Isoelectric Point: 8.9381

>NTDB_id=487660 KEF49_RS12865 WP_065981989.1 2553082..2553777(-) (ysxA/radC) [Bacillus amyloliquefaciens strain Ba13]
MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=487660 KEF49_RS12865 WP_065981989.1 2553082..2553777(-) (ysxA/radC) [Bacillus amyloliquefaciens strain Ba13]
TTGATCATCCGTGATCTGCCGTTGAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTGTGG
GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATCCTGCTGAGGACGGGAACGAAACATGAGTCCGTTATGAATCTCT
CTCACCGGCTGCTGAGGACGTTTGACGGGCTGCGTCTGTTAAAAGGCGCTTCTGCCCAGGAGCTTTCCAGCATCCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA
TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

88.312

100

0.883
  radC Streptococcus pneumoniae TIGR4

49.048

90.909

0.446
  radC Streptococcus pneumoniae R6

48.571

90.909

0.442
  radC Streptococcus pneumoniae D39

48.571

90.909

0.442
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424