Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K749_RS06200 Genome accession   NC_021216
Coordinates   1256249..1256800 (+) Length   183 a.a.
NCBI ID   WP_015644931.1    Uniprot ID   -
Organism   Helicobacter pylori UM299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251249..1261800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K749_RS06185 (K749_01125) cysS 1251428..1252825 (-) 1398 WP_015644928.1 cysteine--tRNA ligase -
  K749_RS06190 (K749_01130) murJ 1252826..1254286 (-) 1461 WP_015644929.1 murein biosynthesis integral membrane protein MurJ -
  K749_RS06195 (K749_01135) - 1254379..1256223 (+) 1845 WP_015644930.1 hypothetical protein -
  K749_RS06200 (K749_01140) ruvA 1256249..1256800 (+) 552 WP_015644931.1 Holliday junction branch migration protein RuvA Machinery gene
  K749_RS06205 (K749_01145) - 1257056..1259533 (+) 2478 WP_015644932.1 DUF3519 domain-containing protein -
  K749_RS06210 (K749_01150) - 1259548..1259988 (+) 441 WP_015644933.1 hypothetical protein -
  K749_RS06215 (K749_01155) - 1259945..1261081 (-) 1137 WP_000462011.1 TrkA family potassium uptake protein -
  K749_RS06220 (K749_01160) rpmB 1261231..1261419 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20099.66 Da        Isoelectric Point: 8.5032

>NTDB_id=48762 K749_RS06200 WP_015644931.1 1256249..1256800(+) (ruvA) [Helicobacter pylori UM299]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=48762 K749_RS06200 WP_015644931.1 1256249..1256800(+) (ruvA) [Helicobacter pylori UM299]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-182)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361