Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KD154_RS17645 Genome accession   NZ_CP073589
Coordinates   3659367..3659903 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MFDS1006657     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3654367..3664903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD154_RS17625 aphA 3654656..3655369 (+) 714 WP_001307512.1 acid phosphatase AphA -
  KD154_RS17630 yjbQ 3655480..3655896 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KD154_RS17635 yjbR 3655900..3656256 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KD154_RS17640 uvrA 3656291..3659113 (-) 2823 WP_077136688.1 excinuclease ABC subunit UvrA Machinery gene
  KD154_RS17645 ssb 3659367..3659903 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KD154_RS17650 yjcB 3660002..3660283 (-) 282 WP_001295689.1 YjcB family protein -
  KD154_RS17655 pdeC 3660713..3662299 (+) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  KD154_RS17660 soxS 3662302..3662625 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KD154_RS17665 soxR 3662711..3663175 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=487378 KD154_RS17645 WP_000168305.1 3659367..3659903(+) (ssb) [Escherichia coli strain MFDS1006657]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=487378 KD154_RS17645 WP_000168305.1 3659367..3659903(+) (ssb) [Escherichia coli strain MFDS1006657]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489