Detailed information NTG0487370

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IF199_RS25785
• Genome accession: NZ_CP062252
• Coordinates: 5617963..5619309 (+)
• Length: 448 a.a.
• NCBI ID: WP_192559026.1
• Uniprot ID: -
• Organism: Pseudomonas allokribbensis strain IzPS23
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5612963..5624309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF199_RS25760	pgeF	5613177..5613899 (-)	723	WP_096820881.1	peptidoglycan editing factor PgeF	-
IF199_RS25765	rluD	5613896..5614858 (-)	963	WP_096820880.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
IF199_RS25770	-	5615011..5616027 (+)	1017	WP_096820879.1	outer membrane protein assembly factor BamD	-
IF199_RS25775	-	5616154..5616387 (+)	234	WP_096820878.1	PP0621 family protein	-
IF199_RS25780	pilS	5616377..5617966 (+)	1590	WP_192559025.1	ATP-binding protein	Regulator
IF199_RS25785	pilR	5617963..5619309 (+)	1347	WP_192559026.1	sigma-54 dependent transcriptional regulator	Regulator
IF199_RS25790	thiO	5619356..5620456 (-)	1101	WP_192559027.1	glycine oxidase ThiO	-
IF199_RS25795	-	5620514..5620915 (-)	402	WP_096820874.1	type IV pilin protein	-
IF199_RS25800	-	5620930..5624022 (-)	3093	WP_192559028.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50151.43 Da
• Isoelectric Point: 6.5786

>NTDB_id=487370 IF199_RS25785 WP_192559026.1 5617963..5619309(+) (pilR) [Pseudomonas allokribbensis strain IzPS23]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLHRDTFDLCLTDMRLPDGTGLELVQHIQQRHPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPATGGVCTSIDRRLLGDSQPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDGEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
AHMLKRLAHGTGQPSTRLHPQALEALKNYRFPGNVRELENVLERAHTLCENRMIEADDLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=487370 IF199_RS25785 WP_192559026.1 5617963..5619309(+) (pilR) [Pseudomonas allokribbensis strain IzPS23]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATTACCCTGGG
ACGGATGAAACTCGACACTTTCAGCGCACGCAATCTCGGCGAAGCCCAGGCATTGCTGCACCGCGATACCTTTGACCTGT
GCCTGACCGACATGCGTCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAGCACATTCAACAACGCCATCCGCAATTGCCG
GTGGCGATGATCACGGCCTATGGCAGCCTGGAAACAGCGATCAACGCCTTGAAGGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTCACGCGGTTGCGTGAACTGGTCGCCACGGCATTGCGCATGCCCGCGACCGGTGGAGTCTGCACATCGA
TCGACCGGCGCCTGCTCGGCGACTCGCAGCCGATGCGCGATCTGCGCAAACAGATCGACAAACTGGCCCGCAGTCAGGCG
CCGGTCTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATTCACGAGCAAGGCCCCCGCGCCAG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCCATTCCGTCAGAGTTGATGGAAAGCGAGTTCTTCGGCCATCGCAAAGGCA
GTTTCACCGGCGCGGTGGAGGACAAACCGGGTCTGTTCCAGGCAGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GACTTGCCGCTATCGATGCAGGTCAAGTTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGCGCCACCCACAAGGACCTGGACGGGGAAGTTGCCGCCGAGCGCTTTCGGCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGCGTACCGTCCCTGCGCGAACGCCGTGATGATATCGAAGCACTGGCC
GCCCATATGCTCAAGCGCCTGGCCCATGGTACCGGCCAACCCTCGACCCGCCTGCATCCGCAAGCGCTTGAAGCCTTGAA
GAACTACCGCTTCCCGGGAAATGTCCGGGAACTTGAGAACGTCCTCGAACGCGCGCACACATTGTGCGAAAACCGCATGA
TCGAAGCCGACGACCTGCGCCTGAGTGAAGGCAACTGCGCGGCCGAGGGCGGCATCGCCGATCTCACGCAGATCGATAAC
CTGGAAGACTATCTGGAAAACGTCGAGCGCAAACTGATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGCTGAATCTATCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	48.366	100	0.496
luxO	Vibrio cholerae strain A1552	37.613	99.107	0.373