Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IF199_RS25780 Genome accession   NZ_CP062252
Coordinates   5616377..5617966 (+) Length   529 a.a.
NCBI ID   WP_192559025.1    Uniprot ID   -
Organism   Pseudomonas allokribbensis strain IzPS23     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5611377..5622966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF199_RS25760 pgeF 5613177..5613899 (-) 723 WP_096820881.1 peptidoglycan editing factor PgeF -
  IF199_RS25765 rluD 5613896..5614858 (-) 963 WP_096820880.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IF199_RS25770 - 5615011..5616027 (+) 1017 WP_096820879.1 outer membrane protein assembly factor BamD -
  IF199_RS25775 - 5616154..5616387 (+) 234 WP_096820878.1 PP0621 family protein -
  IF199_RS25780 pilS 5616377..5617966 (+) 1590 WP_192559025.1 ATP-binding protein Regulator
  IF199_RS25785 pilR 5617963..5619309 (+) 1347 WP_192559026.1 sigma-54 dependent transcriptional regulator Regulator
  IF199_RS25790 thiO 5619356..5620456 (-) 1101 WP_192559027.1 glycine oxidase ThiO -
  IF199_RS25795 - 5620514..5620915 (-) 402 WP_096820874.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58831.75 Da        Isoelectric Point: 6.8246

>NTDB_id=487369 IF199_RS25780 WP_192559025.1 5616377..5617966(+) (pilS) [Pseudomonas allokribbensis strain IzPS23]
MIAEATNATRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALLDILLLCGLFYAAGGVASPIGNLLIVSVAISNTLLRRRIGVLIAAIGALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAGALLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLAQSPLEGHLID
DYSTALVERLHLWLNNPTLRPQSLKIATNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLEPWLVQFVEESREQASER
QRIHLNIESGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLRLFIDPESQLAVLEVQDNGPGVALDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=487369 IF199_RS25780 WP_192559025.1 5616377..5617966(+) (pilS) [Pseudomonas allokribbensis strain IzPS23]
GTGATCGCTGAGGCCACCAACGCCACTCGCAAACAGGCACAGCGACTGCTGCGCCTCTATCATCTCTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGCTGATTTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCGACGACGATCTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCCTGGAGAACATCCGCCGCCCGGCCCAGTTGTTC
GGGCTGGCCCTGCTCGACATCCTGCTGTTGTGCGGGCTGTTTTATGCCGCCGGTGGCGTGGCCAGCCCGATCGGCAATCT
GCTGATCGTCTCGGTAGCCATCAGCAATACCCTGTTGCGACGCCGTATCGGTGTGCTGATTGCAGCCATCGGCGCACTCG
GCATTGTCGGCCTCAGCTTCCTGCTGAGCTTCAGCCATCCCCTGAGCGCCAACGAATACCTGCAAGCAGGCACCCTCGGC
GCCCTGTGTTTTGCCGGGGCGCTGCTGGTGCAAGGCTTGATCCGTCGGCTCGAAGTCAGCGAGACCCTGGCCGAACAACG
GGCCAGCGAAGTGGTCAGCCTCGAAGCCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTCCTCGACG
AACAACGCCGGGTGCAACTGGCCAACCACAGCGCCCGGACCCTGCTGGCGCAATCGCCCCTTGAGGGCCATTTGATCGAC
GACTACTCGACCGCGCTGGTCGAGCGTCTGCATCTGTGGCTGAACAACCCGACACTGCGACCGCAGAGCCTGAAAATCGC
CACCAACGGCCTGGAACTGCAACCGAGCTTCATCGCCCTGGAACAGAGCCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAAGCTCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATCCAGGATCACTCCCAGCGCATGAACCGAGTCATTGAAAACGTCCTGCAACTCTCCCGTCGCCAGC
AGAGCGCCCCGCAGCGACTCGATCTCGAACCGTGGCTTGTGCAGTTCGTCGAGGAAAGCCGGGAACAGGCCAGCGAACGC
CAACGAATTCATCTGAACATCGAATCCGGGGATTTCCGCACCCTGATGGACCCGGGCCAACTGACGCAAATTCTCGACAA
TCTGTTGCGCAACGGCTGGCGGCACAGCGCCCTGCTGCACGATCCTGCAGAGGTCTGGCTGCGGCTGTTCATCGACCCCG
AAAGCCAGCTGGCCGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGGCGCTGGATCAGCAGGCCCACCTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597