Detailed information NTG0487342

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IF189_RS24255
• Genome accession: NZ_CP062251
• Coordinates: 5410192..5411538 (+)
• Length: 448 a.a.
• NCBI ID: WP_192552379.1
• Uniprot ID: -
• Organism: Pseudomonas sp. IzPS59
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5405192..5416538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF189_RS24230	pgeF	5405406..5406128 (-)	723	WP_192552377.1	peptidoglycan editing factor PgeF	-
IF189_RS24235	rluD	5406125..5407087 (-)	963	WP_085712174.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
IF189_RS24240	-	5407240..5408256 (+)	1017	WP_114885609.1	outer membrane protein assembly factor BamD	-
IF189_RS24245	-	5408383..5408616 (+)	234	WP_085712176.1	PP0621 family protein	-
IF189_RS24250	pilS	5408606..5410195 (+)	1590	WP_192552378.1	sensor histidine kinase	Regulator
IF189_RS24255	pilR	5410192..5411538 (+)	1347	WP_192552379.1	sigma-54-dependent transcriptional regulator	Regulator
IF189_RS24260	thiO	5411535..5412635 (-)	1101	WP_134828151.1	glycine oxidase ThiO	-
IF189_RS24265	-	5412693..5413094 (-)	402	WP_085712180.1	type IV pilin protein	-
IF189_RS24270	-	5413109..5416201 (-)	3093	WP_134828152.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50084.32 Da
• Isoelectric Point: 6.5930

>NTDB_id=487342 IF189_RS24255 WP_192552379.1 5410192..5411538(+) (pilR) [Pseudomonas sp. IzPS59]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLNRDTFDLCLTDMRLPDGTGLDLVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPATGGVCTSIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQSFVPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
SHMLKRLAHGTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEADDLRLSEGNCTAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=487342 IF189_RS24255 WP_192552379.1 5410192..5411538(+) (pilR) [Pseudomonas sp. IzPS59]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGGCGAAGCCCAGGCGCTGCTGAACCGCGACACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACCGGGCTGGACCTGGTGCAGCACATCCAGCAACGCTACCCTCAATTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCCTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGATCTCACTCGACTGCGCGAGCTGGTTGCCACCGCATTGCGGATGCCGGCAACCGGCGGTGTCTGTACCTCGA
TTGACCGGCGCCTGCTCGGTGACTCGTTGCCGATGCGCAACCTGCGCAAGCAGATCGACAAGCTGGCCCGCAGTCAGGCG
CCGGTCTATATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATTCACGAGCAAGGCCCGCGCGCCAG
CCAATCGTTCGTGCCGGTGAATTGCGGGGCGATTCCTTCGGAATTGATGGAGAGCGAGTTCTTCGGGCACCGCAAAGGCA
GTTTCACGGGGGCGGTGGACGATAAGCCGGGCCTGTTCCAGGCCGCCCATGGCGGGACGCTGTTTCTCGATGAAGTAGCG
GACTTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGGGCGATACAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATTTTGTGTGCCACCCACAAGGATCTGGACGCCGAAGTCGCCGCCGAACGCTTTCGGCAGG
ATCTGTATTACCGGCTGAACGTGATTGAACTGCGGGTGCCTTCTCTGCGCGAACGTCGTGACGATATCGAGGCATTGGCC
AGCCATATGCTCAAGCGTCTGGCCCACGGCACTGGCCAGCCGGCGGCACGCCTGCATCCTCAAGCGCTGGAGGCCTTGAA
GAACTACCGTTTTCCGGGGAATGTCCGGGAGTTGGAGAACGTCCTTGAGCGTGCGCACACCCTGTGCGAAAACCGCACGA
TCGAGGCCGACGACCTGCGCCTGAGCGAAGGCAATTGCACAGCCGAAGGCGGCATTGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAACGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGTACTGCAGC
GGCCCAGCGGTTGAATCTGTCATTCCGTTCGATGCGCTACAGGCTCAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502
luxO	Vibrio cholerae strain A1552	37.387	99.107	0.371