Detailed information NTG0487341

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KD154_RS10255
• Genome accession: NZ_CP073589
• Coordinates: 2087887..2088879 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MFDS1006657
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2082887..2093879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KD154_RS10230	ygbN	2083542..2084906 (+)	1365	WP_000104439.1	GntP family transporter	-
KD154_RS10235	-	2084945..2085181 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
KD154_RS10240	-	2085192..2086619 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
KD154_RS10245	-	2086619..2087212 (-)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
KD154_RS10250	-	2087359..2087766 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
KD154_RS10255	rpoS	2087887..2088879 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KD154_RS10260	nlpD	2088942..2090036 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KD154_RS10265	pcm	2090221..2090847 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KD154_RS10270	surE	2090841..2091602 (-)	762	WP_001447327.1	5'/3'-nucleotidase SurE	-
KD154_RS10275	truD	2091583..2092632 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
KD154_RS10280	ispF	2092629..2093108 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KD154_RS10285	ispD	2093108..2093818 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=487341 KD154_RS10255 WP_000081550.1 2087887..2088879(-) (rpoS) [Escherichia coli strain MFDS1006657]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=487341 KD154_RS10255 WP_000081550.1 2087887..2088879(-) (rpoS) [Escherichia coli strain MFDS1006657]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715