Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IF189_RS24250 Genome accession   NZ_CP062251
Coordinates   5408606..5410195 (+) Length   529 a.a.
NCBI ID   WP_192552378.1    Uniprot ID   -
Organism   Pseudomonas sp. IzPS59     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5403606..5415195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF189_RS24230 pgeF 5405406..5406128 (-) 723 WP_192552377.1 peptidoglycan editing factor PgeF -
  IF189_RS24235 rluD 5406125..5407087 (-) 963 WP_085712174.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IF189_RS24240 - 5407240..5408256 (+) 1017 WP_114885609.1 outer membrane protein assembly factor BamD -
  IF189_RS24245 - 5408383..5408616 (+) 234 WP_085712176.1 PP0621 family protein -
  IF189_RS24250 pilS 5408606..5410195 (+) 1590 WP_192552378.1 sensor histidine kinase Regulator
  IF189_RS24255 pilR 5410192..5411538 (+) 1347 WP_192552379.1 sigma-54-dependent transcriptional regulator Regulator
  IF189_RS24260 thiO 5411535..5412635 (-) 1101 WP_134828151.1 glycine oxidase ThiO -
  IF189_RS24265 - 5412693..5413094 (-) 402 WP_085712180.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58810.73 Da        Isoelectric Point: 6.7397

>NTDB_id=487341 IF189_RS24250 WP_192552378.1 5408606..5410195(+) (pilS) [Pseudomonas sp. IzPS59]
MIAEATDATRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGLFYAAGGVASPVGNLLIVSVAISNTLLKRRIGVLIAAIGALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAGALLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLAQSPLEGHLID
DYSIALVERLNLWLNNPTLRPQSLKIAANGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLEPWLEHFVEESREQASEH
QRIHLNIETGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAQVWLRLFIDPESQLAVLEVQDNGPGVALDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=487341 IF189_RS24250 WP_192552378.1 5408606..5410195(+) (pilS) [Pseudomonas sp. IzPS59]
GTGATCGCTGAGGCGACCGACGCCACTCGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGTCTGAGCGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACATCGGCCGACGACGAGCTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCCTGGAGAACATCCGCCGTCCGGCCCAGTTGTTC
GGGCTGGCCCTGGTCGACATCCTGCTGCTGTGCGGCTTGTTCTACGCCGCCGGCGGCGTGGCCAGTCCGGTCGGCAATCT
GCTGATCGTCTCGGTAGCCATCAGCAACACGCTGTTGAAACGGCGTATCGGCGTGCTGATCGCGGCCATCGGTGCACTCG
GCATTGTCGGTCTCAGCTTCCTGCTGAGCTTCAGCCATCCCCTGAGCGCCAACGAATACCTGCAAGCGGGAACTCTCGGC
GCCCTGTGTTTTGCCGGAGCGCTGCTGGTGCAAGGCTTGATCCGTCGCCTCGAAGTCAGCGAGACCCTCGCCGAACAACG
GGCCAGCGAGGTGGTCAGCCTCGAAGCTCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATCCTGGTCCTCGACG
AACAACGCCGGGTGCAACTGGCCAACCACAGCGCCCGGACGCTGCTGGCGCAGTCGCCCCTTGAGGGGCATTTGATCGAT
GACTATTCGATCGCACTGGTCGAGCGCCTGAACCTTTGGCTGAACAATCCGACCCTGCGCCCGCAGAGCCTGAAAATCGC
CGCCAACGGCCTGGAACTGCAACCGAGCTTCATCGCCCTGGAGCAGAGCCCGAACCGTCAGACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAGGCCCAGCAACTGAAGCTCGCCGCGCTCGGGCGCCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGTTGGGCGCCATCAGTCATGCCGCACAGTTGCTGCGGGAATCCGAGGAACTCGATGGCGCGGACCGGCG
TCTGACGCAGATCATCCAGGATCACTCCCAGCGCATGAACCGAGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCGCAACGGCTGGATCTCGAGCCCTGGCTCGAGCACTTCGTCGAGGAAAGCCGCGAACAGGCCAGCGAGCAC
CAACGGATTCATCTGAACATCGAAACCGGGGATTTCCGCACCCTGATGGACCCGGGGCAACTGACGCAAATTCTCGACAA
TCTGTTGCGCAATGGCTGGCGACACAGCGCCCTGCTGCACGATCCGGCGCAGGTCTGGCTGCGGCTGTTCATCGACCCCG
AGAGCCAGCTGGCCGTGCTCGAAGTCCAGGACAACGGCCCCGGCGTGGCGCTGGATCAGCAGGCGCATCTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595