Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | K747_RS06190 | Genome accession | NC_021215 |
| Coordinates | 1256288..1256839 (+) | Length | 183 a.a. |
| NCBI ID | WP_015644931.1 | Uniprot ID | - |
| Organism | Helicobacter pylori UM032 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1251288..1261839
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K747_RS06175 (K747_06475) | cysS | 1251467..1252864 (-) | 1398 | WP_015644928.1 | cysteine--tRNA ligase | - |
| K747_RS06180 (K747_13055) | murJ | 1252865..1254325 (-) | 1461 | WP_015644929.1 | murein biosynthesis integral membrane protein MurJ | - |
| K747_RS06185 (K747_06485) | - | 1254418..1256262 (+) | 1845 | WP_015644930.1 | hypothetical protein | - |
| K747_RS06190 (K747_06490) | ruvA | 1256288..1256839 (+) | 552 | WP_015644931.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| K747_RS06195 (K747_06495) | - | 1257095..1259572 (+) | 2478 | WP_015644932.1 | DUF3519 domain-containing protein | - |
| K747_RS06200 (K747_06500) | - | 1259587..1260027 (+) | 441 | WP_015644933.1 | hypothetical protein | - |
| K747_RS06205 (K747_06505) | - | 1259984..1261120 (-) | 1137 | WP_000462011.1 | TrkA family potassium uptake protein | - |
| K747_RS06210 (K747_06510) | rpmB | 1261270..1261458 (-) | 189 | WP_001119000.1 | 50S ribosomal protein L28 | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20099.66 Da Isoelectric Point: 8.5032
>NTDB_id=48722 K747_RS06190 WP_015644931.1 1256288..1256839(+) (ruvA) [Helicobacter pylori UM032]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
Nucleotide
Download Length: 552 bp
>NTDB_id=48722 K747_RS06190 WP_015644931.1 1256288..1256839(+) (ruvA) [Helicobacter pylori UM032]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
93.989 |
100 |
0.94 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
33.333 |
100 |
0.366 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |