Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG51_RS10680 Genome accession   NZ_CP073119
Coordinates   2262200..2262601 (-) Length   133 a.a.
NCBI ID   WP_349306335.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2257200..2267601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS10665 (KCG51_10690) - 2258117..2258380 (-) 264 WP_049332348.1 PAAR domain-containing protein -
  KCG51_RS10670 (KCG51_10695) - 2258429..2259574 (-) 1146 WP_250581007.1 hypothetical protein -
  KCG51_RS10675 (KCG51_10700) uvrB 2259924..2261951 (-) 2028 WP_250581008.1 excinuclease ABC subunit UvrB Machinery gene
  KCG51_RS10680 (KCG51_10705) comP 2262200..2262601 (-) 402 WP_349306335.1 type IV pilin protein Machinery gene
  KCG51_RS10685 (KCG51_10710) - 2262638..2263644 (+) 1007 Protein_2063 IS5 family transposase -
  KCG51_RS10690 (KCG51_10715) comE 2264097..2264384 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14652.97 Da        Isoelectric Point: 9.9040

>NTDB_id=487093 KCG51_RS10680 WP_349306335.1 2262200..2262601(-) (comP) [Neisseria subflava strain HP0069]
MLGNFAKVSAYRESVRSANLRAAHAALLENARFMEQFYMKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEGKFTL
KAVALDREAEPRVLRLNESLTAVVCGKMKGKGNCTDGEEIFRGNDAECRPFTG

Nucleotide


Download         Length: 402 bp        

>NTDB_id=487093 KCG51_RS10680 WP_349306335.1 2262200..2262601(-) (comP) [Neisseria subflava strain HP0069]
ATTTTGGGGAATTTTGCAAAGGTCTCGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGCGCATGCCGCCCT
GCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACATGAAAAAGGGCAGCTTTAAGCTGACGTCGACGAAGTGGCCGGAGC
TGCCGGTAAAGGAGGCGGGTGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGGATCTTGGAGGGGAAGTTTACTTTG
AAGGCGGTGGCGCTGGACAGGGAAGCGGAGCCGAGGGTATTGCGCTTGAACGAGTCGCTGACGGCGGTGGTGTGCGGGAA
AATGAAGGGGAAGGGAAACTGTACTGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGCCGGCCTTTTACGGGGT
AG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(10-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

95.312

96.241

0.917
  comP Neisseria meningitidis 8013

51.639

91.729

0.474
  comP Neisseria gonorrhoeae MS11

51.667

90.226

0.466